Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0327
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 108 7e-25
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 100 2e-22
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 32 0.073
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 31 0.17
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 28 1.6
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.1
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 3.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 3.6
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 4.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.8
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 26 6.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 6.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 6.4
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 108 bits (260), Expect = 7e-25
Identities = 51/82 (62%), Positives = 63/82 (76%)
Frame = +2
Query: 266 TPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIV 445
TP PSDI IARSQ PK+IG+LA+EIG+ SE+ YG KAK++L +L RL ++R G Y+V
Sbjct: 308 TPVPSDIEIARSQTPKNIGDLASEIGIAKSELEFYGSHKAKVNLEILQRLAHRRDGHYVV 367
Query: 446 VAGITPTPLGEGKSTTLIGLVK 511
V GITPTP GEGKST GLV+
Sbjct: 368 VTGITPTPFGEGKSTLTAGLVQ 389
Score = 97.5 bits (232), Expect = 2e-21
Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
Frame = +3
Query: 3 WIKPGAVVIDCGINAIEDPTKKSGQRLVGDVAYQEAVKVASAVTPVPGGVGPMTVAMLMR 182
W+K G V ID GIN+I D TKKSG RL GD+ ++ A +VASA+TPVPG VGPMTVAML++
Sbjct: 222 WLKKGVVAIDVGINSIPDATKKSGYRLTGDIDFENAKEVASAITPVPGSVGPMTVAMLLQ 281
Query: 183 NTVQAA--RRQLDRLLAPS-WPLKPLRSP 260
N V++A R++ R P+ PLK L++P
Sbjct: 282 NVVESAVRFRKMSRKRKPTLLPLK-LQTP 309
Score = 90.6 bits (215), Expect = 2e-19
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = +1
Query: 532 KNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAA 699
K A AC+RQPSQGPTFG+K YSQ IPMEEFNLH+TGDIHA+TAA NLLAA
Sbjct: 396 KLAIACVRQPSQGPTFGIKGGAAGGGYSQFIPMEEFNLHLTGDIHAITAATNLLAA 451
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 100 bits (240), Expect = 2e-22
Identities = 46/86 (53%), Positives = 64/86 (74%)
Frame = +2
Query: 269 PPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIVV 448
P PSDI IA SQ+PK I LA E+G+ +E+ YG KAK++L+V +RL++++ G Y+VV
Sbjct: 337 PVPSDIEIANSQEPKLISNLAKEMGIYDTELENYGNYKAKVNLAVYERLKHRKDGNYVVV 396
Query: 449 AGITPTPLGEGKSTTLIGLVKR*QHI 526
+GITPTP GEGKST + GLV+ H+
Sbjct: 397 SGITPTPFGEGKSTVVAGLVQAMGHL 422
Score = 93.1 bits (221), Expect = 4e-20
Identities = 42/59 (71%), Positives = 46/59 (77%)
Frame = +1
Query: 523 HRGKNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANNLLAA 699
H GK AC+RQPSQGPTFGVK Y+Q IPM++FNLHMTGDIHAVTAANNLL A
Sbjct: 421 HLGKLGIACVRQPSQGPTFGVKGGAAGGGYAQFIPMDDFNLHMTGDIHAVTAANNLLVA 479
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/68 (63%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Frame = +3
Query: 3 WIKPGAVVIDCGINAIEDPTKKSGQR-LVGDVAYQEAVKVASAVTPVPGGVGPMTVAMLM 179
W+KPG+VV+D GINA++ ++G+R LVGDV ++ A KVAS++TPVPGGVGPMTVAMLM
Sbjct: 253 WLKPGSVVVDVGINAVQ----RNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLM 308
Query: 180 RNTVQAAR 203
N V AA+
Sbjct: 309 ENIVNAAK 316
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 32.3 bits (70), Expect = 0.073
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 555 PHACKRVLPAMCCQRFTRPIRVVLLPSPSGVGVIPATTMYFPV 427
P + + + CQR +RPI V L P G V+P+T + V
Sbjct: 107 PTIAVQTMRGVVCQRMSRPINRVGLYIPGGTAVLPSTALMLGV 149
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 191 AGSAPTARPLACPLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPS 355
A ++ TA P + S+T + PITP S I + + PK + I C S
Sbjct: 304 AAASATAPPQVTSPMVSQTQPVNPITPNYSSIPLPAERNPKTPQSFSTNIVQCAS 358
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 606 PSSSTPFNAKGRSLTRLPHACKRVLPAMCCQRFTRPIRVVL 484
PS + PF+ K +S+ PH+ LP F +PI V L
Sbjct: 95 PSLNAPFSEKNQSVKIPPHS--PTLPVQNASAFVKPISVPL 133
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 163 PWRCSCGTPCRQRADSSTACLPPLGL*NRFAHPDYATAQ 279
P + TP R + + T+ LPP+G +FA P A AQ
Sbjct: 431 PQESATATPKRSPSATPTSALPPIG---KFAPPTTAKAQ 466
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +2
Query: 152 GAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIVIARSQKPKDIGELA 331
GA G A+ + P +P+A L A + +T +T P D+V R Q + I + +
Sbjct: 4 GAATEG-VEADLSVNAEPDVKPIAKMLSACVGSVITTLTVTPLDVVKTRLQS-ESISQYS 61
Query: 332 AEIGLCPSEVSQYGRTKAK 388
+ + +++ GR K
Sbjct: 62 STQPISSAKILGKGRPAPK 80
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 530 PRCAVNASPDLLEWCFYLHQVVSE---LYQQLRCISLCVGCVVCR 405
P NAS DL C+ H + E L ++RC C+ C C+
Sbjct: 474 PLNLANASSDL---CYVCHSALEEDCVLLGEIRCHIGCLSCTKCK 515
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -2
Query: 522 CCQRFTRPIRVVLLPSPSGVGVIPATTMYFPVRWLRSLSRTDSEILALVRPY*DTSLGHR 343
C T P ++ +LP+ ++ T YF R+L L + + ++ LVR D + R
Sbjct: 628 CALSRTIP-KLSILPTNGQYFLLTGATGYFGRRFLEYLVKLNISVVCLVRESSDEAAKER 686
Query: 342 PISAASS 322
IS S
Sbjct: 687 LISLVPS 693
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +2
Query: 167 GDAHAEHRAGSAPTARPLACPLLASETASLTPITPP---PSDIVIARSQKPKDIGELAAE 337
G AEH G+ + L+ P + ++ S++P PP S+ + P G L E
Sbjct: 1782 GSFDAEHAVGATFSQDDLSDPARSVDSDSVSPPLPPFVAGSNPNARNNNNPYFYGNLHTE 1841
Query: 338 IGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGK 436
L + V G+ K SL+ ++ G+
Sbjct: 1842 SSLSLASVMS-GKEKRDFSLTRVEETFTDEDGQ 1873
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 150 VGPMTVAMLMRNTVQAARRQLDR 218
+G +T+AML+RN ++ QL++
Sbjct: 294 IGKVTIAMLLRNLIRLTSYQLNK 316
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 545 ANAFFPRCAVNASPDLLEWCFYLHQVVSELYQQLR--CISLCVGCVVCRER 399
AN F S + + CFYL V++ LY+ +R L G +V RER
Sbjct: 366 ANDFMQSEDYAKSEPIEDDCFYLDNVITPLYEFIRDQQFELLDGKLVRRER 416
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 170 DAHAEHRAGSAPTARPLACPLLASETASLTPITPP---PSDIVIARSQKP 310
DA A S + +PL+ P+++S+ T + PP PS V + S KP
Sbjct: 76 DAVASSSNVSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKP 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,092
Number of Sequences: 5004
Number of extensions: 58500
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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