Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0327
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18696| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0) 83 3e-16
SB_36794| Best HMM Match : FTHFS (HMM E-Value=0) 47 2e-05
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 32 0.42
SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5) 31 0.73
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 31 0.96
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 30 2.2
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075) 29 2.9
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 3.9
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 29 3.9
SB_57694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4) 29 5.1
SB_18409| Best HMM Match : DM (HMM E-Value=5.9) 29 5.1
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 6.8
SB_27482| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_12319| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 6.8
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094) 28 6.8
SB_40826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_9504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_18696| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0)
Length = 119
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = +3
Query: 6 IKPGAVVIDCGINAIEDPTKKSGQRLVGDVAYQEAVKVASAVTPVPGGVGPMTVAMLMRN 185
+K GA+V+D GIN I+D T+KSG+RLVGDV + S +TPVPGGVG MT+ LM N
Sbjct: 51 VKEGAIVLDVGINRIDDATRKSGKRLVGDVDFDNVKDKCSFITPVPGGVGLMTICGLMMN 110
Query: 186 TVQAARR 206
T++AA++
Sbjct: 111 TLEAAKQ 117
>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
Length = 388
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +1
Query: 508 EALTAHRGKNAFACMRQPSQGPTFGVKXXXXXXXYSQVI 624
+A+ AH KN F C+RQPSQGPTFG+K Y + I
Sbjct: 20 QAMGAHLKKNCFTCIRQPSQGPTFGIKVIDTNDRYLRKI 58
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 455 ITPTPLGEGKSTTLIGL 505
ITPTP GEGKSTT IG+
Sbjct: 2 ITPTPFGEGKSTTTIGV 18
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG GA D HA G+ PT+ PLA E A T + P S ++
Sbjct: 887 AGGPGAERATDPHAAADGGTPPTSPPLAAAQQTKERAPATALRAPGSRLL 936
>SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5)
Length = 529
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG GA D HA G+ PT PLA E A T + P S ++
Sbjct: 477 AGGPGAERATDPHAAADGGTPPTRPPLAATQQTKERAPATALRAPGSRLL 526
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG GA D HA G+ PT PLA E A T + P S ++
Sbjct: 907 AGGPGAERATDPHAAADGGTPPTRPPLAATQQTKERAPATALRAPGSRLL 956
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
AG GA D HAE G+ P PLA +E A T + P
Sbjct: 1326 AGGPGAERATDPHAEADGGTPPAMPPLAAAQQTNERAPATALRAP 1370
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
AG GA D HA G+ PT PLA E A T + P
Sbjct: 942 AGGPGAERATDPHAAADGGTPPTRPPLAAAQQTKERAPATALALP 986
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG G D HA G+ PT PLA E A T + P S ++
Sbjct: 168 AGGPGVERATDPHAAADGGTPPTRPPLAAAQQTKERAPATALRAPGSRLL 217
>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
Length = 911
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG GA D HA G+ P PLA E A T + P S ++
Sbjct: 714 AGGPGAERATDPHAAADGGNPPVRPPLAAAQQTKERAPATALRAPGSRLL 763
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG GA D H G+ PT PLA E T + P S ++
Sbjct: 936 AGGPGAERAADPHTAADGGTPPTRPPLAAAQQTKERVPATALRAPGSRLL 985
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 152 GAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
GA D HA G+ PT PLA E A T + P S ++
Sbjct: 551 GAERSTDPHAAADGGTPPTRPPLAATQQTKERAPATALRTPGSRLL 596
>SB_57694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 299 SQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDR-LRNQRTGKYIVVAG-ITPTPL 472
++K +D+ L AE SE + K + ++++R R +R Y +A I +
Sbjct: 143 NEKERDVMSLPAEEDTAVSEAEKIQVGKPVVPAALMNRPTRGERRFAYWALAECILAYYV 202
Query: 473 G--EGKSTTLIGLVKR*QHIAGRTRLHACGNRVRD 571
G EG S L H+AG RLH C +R+ D
Sbjct: 203 GTDEGVSEVL--------HVAGEKRLHRCVSRICD 229
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 152 GAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
GA D HA G+ PT PLA E A T + P S ++
Sbjct: 410 GAERSTDPHAAADGGTPPTRPPLAATQQTKERAPATALRTPGSRLL 455
>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
Length = 422
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 534 ERVCMHAATESGT-DLWR*RGCCWRGLLSS-NSNGGVQPAHDWRH 662
ER C+H + T D+ GCCWR + S N +Q W+H
Sbjct: 169 ERACLHHCQKHETVDV---EGCCWRNMFSCVNLVRILQKLTKWKH 210
>SB_18409| Best HMM Match : DM (HMM E-Value=5.9)
Length = 190
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 560 GCRMHANAFFPRCA--VNASPDLLEWCFYLHQVVSELYQQLRCISLCVGCVVCRERTVKS 387
GCR +A+ CA V+ + C Y H Y +SLC CV RTV+
Sbjct: 42 GCRYAHSAWMSLCAQCVDVVMHTVRRCRYAHMRGCR-YADSAWVSLCAQCVDVVMRTVRG 100
Query: 386 WP*YVH 369
+ Y+H
Sbjct: 101 YR-YLH 105
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 518 VNASPDLLEWCFYLHQVVSELY---QQLRCISLCVGC 417
V + P LL C+Y V + Y QQ +C++LC GC
Sbjct: 199 VKSMPGLLGRCYYC-TVCKKGYDSGQQHKCVNLCYGC 234
>SB_27482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 203 PTARPLACPLLASETASLTPITPPPSDIVIARSQKPKDIGEL 328
PT P+ P + S TP+ PPP+D V+ + K + +L
Sbjct: 18 PTCTPVTLPFI-----SCTPVHPPPNDTVLTLTHLKKCLVDL 54
>SB_12319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 528 AMCCQRFTRPIRVVLLPSPSGVGVIP 451
A CC + P RV L P PSG + P
Sbjct: 30 AFCCHGYLAPGRVCLYPGPSGRHLSP 55
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 140 AGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
AG A D HA G+ PT PLA E A T + P S ++
Sbjct: 1273 AGGPRAERATDPHAAADGGTPPTRPPLAAARQTKERAPATALRAPGSRLL 1322
>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
Length = 1671
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 56 SYKEKRATFSGRRGLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAP 205
S + + A+ SG + G S DSC+ R ++ R+ SAP
Sbjct: 1489 STRSETASSSGYESMRGNDTSHLSSDSCSERETVREKRRGFRRKRSNSAP 1538
>SB_40826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 197 SAPTARPLACPLLASETASLTPITPPPSDIVIARSQKPKDI 319
S PT P+ P + S TP+ PPP+ IV+ + K I
Sbjct: 32 SLPTCTPVNLPFI-----SCTPVHPPPNAIVLTLTPLKKSI 67
>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = -1
Query: 571 VPDSVAACMQTRSSRDVLSTLHQTY*SGAFTFTKWCRSYTSNYDVF------PCALV 419
VP+S+ Q + +R LSTLH Y G ++ K ++ Y F PCAL+
Sbjct: 175 VPESLKMLPQYKLARVHLSTLHNEYVVGNWSGIKALFTFERMYSYFVIHVYGPCALI 231
>SB_9504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 521 HIAGRTRLHACGNRVRD 571
H+AG RLH C NR+ D
Sbjct: 46 HVAGEKRLHRCVNRICD 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,714,148
Number of Sequences: 59808
Number of extensions: 502002
Number of successful extensions: 2538
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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