Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0327
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-2|AAC69104.1| 640|Caenorhabditis elegans Hypothetical pr... 117 7e-27
U41552-1|AAC69101.2| 640|Caenorhabditis elegans Hypothetical pr... 117 7e-27
U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging ... 87 9e-18
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.9
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 30 1.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 30 1.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 30 1.9
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF025460-1|AAB70991.2| 293|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 28 5.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 28 5.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 28 5.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 5.9
AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical ... 28 5.9
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 28 7.8
>U41552-2|AAC69104.1| 640|Caenorhabditis elegans Hypothetical
protein K07E3.4a protein.
Length = 640
Score = 117 bits (282), Expect = 7e-27
Identities = 70/161 (43%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Frame = +2
Query: 257 TPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGK 436
T +TP PSDI I+R+Q PKDI ++A EIG+ E+ YGR KAK+SL +LDRL + GK
Sbjct: 12 TLLTPVPSDIAISRAQPPKDIEKVAGEIGIKQEELDLYGRKKAKVSLDILDRLSEVKNGK 71
Query: 437 YIVVAGITPTPLGEGKSTTLIGLVKR-*QHIAGRTRLHACGNRVRDRP-LALKGVLLEGA 610
Y+VVAGITPTPLGEGKSTT IGLV+ H+ ++ AC + P +KG G
Sbjct: 72 YVVVAGITPTPLGEGKSTTTIGLVQALGAHL--HKKVFACVRQPSQGPTFGIKGGAAGGG 129
Query: 611 TLK*FQWRSSTCT*LATFMP*PLPTIFLLHKMDARIFHELT 733
+ L +DAR+FHE T
Sbjct: 130 YSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDARMFHEST 170
Score = 103 bits (247), Expect = 1e-22
Identities = 47/64 (73%), Positives = 52/64 (81%)
Frame = +1
Query: 508 EALTAHRGKNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANN 687
+AL AH K FAC+RQPSQGPTFG+K YSQVIPMEEFNLH+TGDIHA+TAANN
Sbjct: 96 QALGAHLHKKVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANN 155
Query: 688 LLAA 699
LLAA
Sbjct: 156 LLAA 159
>U41552-1|AAC69101.2| 640|Caenorhabditis elegans Hypothetical
protein K07E3.4b protein.
Length = 640
Score = 117 bits (282), Expect = 7e-27
Identities = 70/161 (43%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Frame = +2
Query: 257 TPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGK 436
T +TP PSDI I+R+Q PKDI ++A EIG+ E+ YGR KAK+SL +LDRL + GK
Sbjct: 12 TLLTPVPSDIAISRAQPPKDIEKVAGEIGIKQEELDLYGRKKAKVSLDILDRLSEVKNGK 71
Query: 437 YIVVAGITPTPLGEGKSTTLIGLVKR-*QHIAGRTRLHACGNRVRDRP-LALKGVLLEGA 610
Y+VVAGITPTPLGEGKSTT IGLV+ H+ ++ AC + P +KG G
Sbjct: 72 YVVVAGITPTPLGEGKSTTTIGLVQALGAHL--HKKVFACVRQPSQGPTFGIKGGAAGGG 129
Query: 611 TLK*FQWRSSTCT*LATFMP*PLPTIFLLHKMDARIFHELT 733
+ L +DAR+FHE T
Sbjct: 130 YSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDARMFHEST 170
Score = 103 bits (247), Expect = 1e-22
Identities = 47/64 (73%), Positives = 52/64 (81%)
Frame = +1
Query: 508 EALTAHRGKNAFACMRQPSQGPTFGVKXXXXXXXYSQVIPMEEFNLHMTGDIHAVTAANN 687
+AL AH K FAC+RQPSQGPTFG+K YSQVIPMEEFNLH+TGDIHA+TAANN
Sbjct: 96 QALGAHLHKKVFACVRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANN 155
Query: 688 LLAA 699
LLAA
Sbjct: 156 LLAA 159
>U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging
adult overexpressionprotein 3 protein.
Length = 303
Score = 87.4 bits (207), Expect = 9e-18
Identities = 41/69 (59%), Positives = 52/69 (75%)
Frame = +3
Query: 3 WIKPGAVVIDCGINAIEDPTKKSGQRLVGDVAYQEAVKVASAVTPVPGGVGPMTVAMLMR 182
WIKPGA VIDCGIN +DP + ++ GDV + A +VA +TPVPGGVGPMTVAML+R
Sbjct: 228 WIKPGAFVIDCGINVGDDPNSR---KIYGDVDTEAAKEVAGFLTPVPGGVGPMTVAMLIR 284
Query: 183 NTVQAARRQ 209
NT + A+R+
Sbjct: 285 NTFEQAKRR 293
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVTGGAASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCEPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCEPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCEPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 29.9 bits (64), Expect = 1.9
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Frame = +2
Query: 68 KRATFSGRRGLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASET 247
K A S R GG+ + RGA R A A A P A P+A P A+
Sbjct: 221 KFAARSSRMAARRGGRPGYRGAFRGAARGAPSRRPAPAAEVAPETPVAAPMA-P--AAPA 277
Query: 248 ASLTPITPPPSDIV---IAR---SQKPKDIGELAAEIGLCPSEVSQYGR----TKAKISL 397
A TP P ++++ IA + D+ ++A + S+ + R K KI
Sbjct: 278 APATPEAAPAAEVMDTSIATEMPQESAVDLSNVSAATEMDTSKEGEASRPTSEKKKKIRT 337
Query: 398 SVLDRLRNQRTG 433
+ +DRL + G
Sbjct: 338 TEMDRLMSMDLG 349
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = -1
Query: 262 RGERSGFRGQ-EGASKRSSCRR---AACTVFRMSIATVMGPTPPGTGVTAEATLTASW*A 95
RG R G+RG GA++ + RR AA +A M P P T EA A
Sbjct: 233 RGGRPGYRGAFRGAARGAPSRRPAPAAEVAPETPVAAPMAPAAPAAPATPEAAPAAEVMD 292
Query: 94 TSPTKRCP 71
TS P
Sbjct: 293 TSIATEMP 300
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCEPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVTGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCEPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVNGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCDPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 85 GVNGGSASAGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGRPPQQPCDPITPP 143
Query: 275 P 277
P
Sbjct: 144 P 144
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 95 GLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPP 274
G+ GG S+ GCD+C A G R G P A L PITPP
Sbjct: 52 GVNGGSASTGGCDACCLPGAAGPAGTPGKPGRPGK-PGAPGLPGNPGHPPQQPCDPITPP 110
Query: 275 P 277
P
Sbjct: 111 P 111
>AF025460-1|AAB70991.2| 293|Caenorhabditis elegans Hypothetical
protein F53A3.6 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 342 PISAASSPMSLGF*ERAITMSLGGGVIGVSEAVSEAKRGQASGRAVGALPARCSA*AS 169
P S+AS+ + G + T S G G+IG+S A + Q + +A A A +A A+
Sbjct: 106 PASSASTSGAPG--AHSATTSGGAGLIGISAATQAQLQAQQAAQAAAAAAAAAAAQAT 161
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 696 SKKIVGSGYGMNVASHVQVELLHWNYLRVAPSSSTPFNAKGRSLTRL 556
+KKIV + M VA+ + E W L V +S T FNA ++ RL
Sbjct: 216 TKKIVSFEWPMAVANLMLDEGASWIPLFVTSTSHTVFNAVAATMARL 262
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 696 SKKIVGSGYGMNVASHVQVELLHWNYLRVAPSSSTPFNAKGRSLTRL 556
+KKIV + M VA+ + E W L V +S T FNA ++ RL
Sbjct: 216 TKKIVSFEWPMAVANLMLDEGASWIPLFVTSTSHTVFNAVAATMARL 262
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1652 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1701
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1943 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1992
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1958 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 2007
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1762 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1811
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1652 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1701
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1943 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1992
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1958 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 2007
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 227 PLLASETASLTPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGR 376
P+L S+ + +P++ SD+ KDI +LAA++ P ++Q R
Sbjct: 1762 PVLVSQQSQPSPMSSQQSDMAQNLILSSKDINDLAAKLHKNPEALAQATR 1811
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +2
Query: 86 GRRGLPG--GGQSSFGCDSCAGRRGA-------HDRGDAHAEHRAGSAPTARP 217
GR G PG GGQ G AGR GA RG+ E+R G A A P
Sbjct: 162 GRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGPPGPRGEPGTEYRPGQAGRAGP 214
>AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical
protein F53C3.6a protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +2
Query: 92 RGLPGGGQSSFGCDSCAGRRGAHDRGDAHAEHRAGSA 202
RG GGG+ S G G RG RG R+G A
Sbjct: 27 RGGGGGGRGSSGARGGVGGRGGGGRGGGGGGFRSGGA 63
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 185 HRAGSAPTARPLACPLLASETASL-TPITPPPSDIVIARSQKPKDIGELAAEIGLCPSEV 361
H G + P A P+ ++ TP PPP I + KP +G L + S
Sbjct: 196 HTTGLVWNSDPGATPMCNRKSGGAPTPPPPPPPPISLIAPSKPSGVGALLESLNTGLSAT 255
Query: 362 SQ 367
S+
Sbjct: 256 SR 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,577
Number of Sequences: 27780
Number of extensions: 352212
Number of successful extensions: 1336
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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