Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0327
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.079
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 0.079
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 113 QSSFGCDSCAGRRGAHDRGDAHAEHRAGSAPTARPLACPLLASETASLTPITPPPSDIV 289
           +SS    +C+G       G     H +   P  + L  P+L+S T + +P+T   S IV
Sbjct: 284 RSSSASTTCSGHTVRCFTGGPRKSHES-QCPMLQKLEKPVLSSSTTTTSPMTSTKSTIV 341


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 646 HMTGDIHAVTAANNLLAAQNGRAHL 720
           H  G +HA     N+L ++NG+  L
Sbjct: 172 HNAGIVHADVKPKNILMSKNGQPKL 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,814
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)