Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0325
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 309 FMHSAERPVVRSYHPRDY 256
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 309 FMHSAERPVVRSYHPRDY 256
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 300 SAERPVVRSYHPRDY 256
           SA  P+VRSY P  Y
Sbjct: 281 SAATPLVRSYAPERY 295


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 295 RAAGGAKLPSAGLC 254
           ++  G ++PSAGLC
Sbjct: 99  KSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 295 RAAGGAKLPSAGLC 254
           ++  G ++PSAGLC
Sbjct: 47  KSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 295 RAAGGAKLPSAGLC 254
           ++  G ++PSAGLC
Sbjct: 230 KSCQGCEMPSAGLC 243


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +3

Query: 480 EEPTSKDQKARRYERLAATSQLSLW*LFWHL 572
           E P + D+  RR+  +   S + L   +W +
Sbjct: 373 ESPPAADELLRRFHEIRYMSTIDLRSSYWQI 403


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,655
Number of Sequences: 336
Number of extensions: 3233
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)