Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0325
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   4.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   7.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.5  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   9.5  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.5  

>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 527 GCHKPVIPVVTFLAPLGKNSLY*RID 604
           GC    IP+VT    LG++ +Y  +D
Sbjct: 144 GCSSQAIPIVTAYETLGEDGIYTSLD 169


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 564 WHLLVKTLYTKGSIGRAFAVPMRTEH 641
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -1

Query: 161 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 39
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 516 SDVLFDPSMSALPIIAKQNSPSV 448
           S +L D  +SALPI+A + S  +
Sbjct: 68  SSILIDRDLSALPIVAAKGSNEI 90


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 PNVRNCGSSRTEQYYYRNDKPSVG 381
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,159
Number of Sequences: 5004
Number of extensions: 55047
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)