Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0325
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.1
07_03_0846 - 21983581-21986055 29 2.4
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 28 5.6
09_04_0407 + 17345382-17345579,17345711-17346235 28 7.5
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.5
02_05_1294 + 35525704-35525975,35527647-35527717,35527817-355280... 28 7.5
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 28 7.5
01_06_1777 + 39818212-39819696 28 7.5
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 27 9.9
06_01_0918 + 7083570-7083705,7083977-7084008 27 9.9
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 9.9
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.9
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 233 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 99
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 91 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 240
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 320 RTFGSCTRPSGRWCEATIRGIMLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 153
R GS RP C A I+ + + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 152 SRV 144
R+
Sbjct: 146 RRL 148
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 285 VVRSYHPRDYAERL*GRSQPSRIRQGYAHCGAP 187
+ + YHP+ A +S S IR+ YAHC P
Sbjct: 4 LAQEYHPKLPATNHYCKSLSSLIRETYAHCHVP 36
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 242 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 69
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 68 TRASR 54
TRA+R
Sbjct: 64 TRAAR 68
>02_05_1294 +
35525704-35525975,35527647-35527717,35527817-35528004,
35528153-35528276,35528423-35528553,35529009-35529132,
35529753-35529844,35529895-35529936,35530036-35530071
Length = 359
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 590 IKSFYQEVPEKLPQG*LACGSQAFIATCFLILRCRLFLSLRSKI 459
+KSFY+E E LP G A F+I +C + LRS I
Sbjct: 119 VKSFYKEDDETLPVN--MYGKSKVAAEKFIIEQCSNYAILRSSI 160
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 341 VREEPQFRTFGSCTRPSGRWCEATIRGIMLNAS-KAEASLAESGKDMLTVEPRESGGSKQ 165
+ P G RP+ +++IRGI+ S KA++SL + + +L + S +Q
Sbjct: 60 ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119
Query: 164 CDFTSRVSHS 135
T+ S S
Sbjct: 120 VKATTSRSFS 129
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 184 SRGSTVSISLPDSARLASALEAFSIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 342
+R T SI + + ++A I+ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -1
Query: 323 FRTFGSCTRPSGRWCEATIRGIMLNASKAEASLAESGKDMLTVEPRESGGSKQCDFT 153
FR G+ RP+ T R M S + AE+GK M P GG + C F+
Sbjct: 110 FRAHGALLRPAASALTKTPRRKMRGTSDQSPAAAEAGKRMAL--PERLGG-EPCSFS 163
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 540 GLWQPSVHSDVLFDPSMSALPIIAKQNSP 454
GLW+PS H+ L P+ S L + +P
Sbjct: 10 GLWRPSAHAAALRAPASSVLSTTPPRQTP 38
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 214 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 110
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 73 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 252
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
Query: 253 S 255
+
Sbjct: 626 A 626
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,780
Number of Sequences: 37544
Number of extensions: 394345
Number of successful extensions: 1002
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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