Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0324
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 32 0.31
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.2
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 3.9
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 3.9
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 3.9
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 3.9
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 8.9
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL032632-8|CAA21592.2| 420|Caenorhabditis elegans Hypothetical ... 27 8.9
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 27 8.9
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -3
Query: 348 PQSQSLFRSYGSNLPTSLTYIILSTRGSSPWNLLRIWVRTGATSPRTS 205
P S S RS L T TY S+ S NLL+I + T TSP S
Sbjct: 700 PTSSSETRSTALTLSTESTYSPGSSGASEDPNLLKITISTAGTSPHAS 747
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 422 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 309
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 439 LTR*NEHNARTSTRPGTGRIRFPSKPDT 356
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 439 LTR*NEHNARTSTRPGTGRIRFPSKPDT 356
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 439 LTR*NEHNARTSTRPGTGRIRFPSKPDT 356
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 439 LTR*NEHNARTSTRPGTGRIRFPSKPDT 356
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 189 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 61
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 173 IRTPPQMRCSSRSEPYLPSIGFHGT 99
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AL032632-8|CAA21592.2| 420|Caenorhabditis elegans Hypothetical
protein Y11D7A.13 protein.
Length = 420
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 443 FNIMRPQKLYIFNMTLAKIVLRSDWIRTRVLRPSADLP 556
FN + +++ MTL K +L + +RT ++ + DLP
Sbjct: 283 FNKISEMEIHDMEMTLTKFLLENRELRTDLISRNGDLP 320
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -1
Query: 407 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGTC---CG 243
+D + P P P Q H P +R NP P+ + P+ L L A H+G
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGDAPIRMA 110
Query: 242 YGYEPARH 219
Y +P +H
Sbjct: 111 YTGQPTQH 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,013
Number of Sequences: 27780
Number of extensions: 349995
Number of successful extensions: 1125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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