Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0322
         (326 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.27 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.27 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.27 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   3.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   5.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 0.27
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27  TRPSGRWCEVPSAGLC 74
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 0.27
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27 TRPSGRWCEVPSAGLC 74
          ++ S + CE+PSAGLC
Sbjct: 45 SKKSCQGCEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 0.27
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 27  TRPSGRWCEVPSAGLC 74
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 163 CLEPPDSRGSTVSISLPDSARLAS 92
           C  PPD  G+T+S S P+  R +S
Sbjct: 168 CRCPPDWEGTTLSQS-PNRRRASS 190


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 102 LAESGKDMLTVEPRESGGSKQCDFTS 179
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 ARVKKKPIASISAIQMGFDVAS 202
           A   +KP +    ++MG D+AS
Sbjct: 202 AMFSRKPCSINENLKMGLDIAS 223


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 ARVKKKPIASISAIQMGFDVAS 202
           A   +KP +    ++MG D+AS
Sbjct: 202 AMFSRKPCSINENLKMGLDIAS 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,205
Number of Sequences: 336
Number of extensions: 1527
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6261139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)