Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0322
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 0.95
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 25 2.9
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 25 2.9
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 2.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 24 5.1
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 24 5.1
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 24 5.1
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 24 6.7
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 24 6.7
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 8.8
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 8.8
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 8.8
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 0.95
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 189 HSKRETRRRSPFGSRRSMLSVFS*HVHHGSEGPDITQFDV 308
+S RET PF SR+ +S S ++ G P I +++
Sbjct: 527 NSFRETESPKPFLSRQIGISTLSSNISSGKGTPSIQDYEI 566
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 100 LASALEAFRHNPADGTSHHRPLGRVHEPNVR 8
LA +A R+NP+ G H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 100 LASALEAFRHNPADGTSHHRPLGRVHEPNVR 8
LA +A R+NP+ G H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 2.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 51 EVPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 164
E +A A +AEA E+ K+++ EP+++ +K+
Sbjct: 93 EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.2 bits (50), Expect = 5.1
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +3
Query: 141 RESGGSKQCD---FTSRVSHSKRETRRRSPFGSRRSMLSVFS*HVHHGSEGPD 290
RE GG D SR S S E R RSP+ RS S S PD
Sbjct: 100 RERGGRVHGDSGRLRSR-SPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPD 151
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 209 TSKPIWIAEIDAIGFFLTRASRLR 280
TS+P+++A G+F T AS L+
Sbjct: 163 TSRPVYLAVPSDAGYFYTDASPLK 186
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 5.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 235 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 107
L P+G R VS + +++K+ C P SRG TV PD+
Sbjct: 6 LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 100 LASALEAFRHNPADGTSHHRPLGRVHEPNVR 8
LA +A R+NP+ G H R R+ VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFTKAVR 86
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 23.8 bits (49), Expect = 6.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 73 HNPADGTSHHRPL 35
HNP D HHR L
Sbjct: 418 HNPIDNNKHHRML 430
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 154 PPDSRGSTVSISLPDSARLASALEAFRHNP 65
P D + T S S+ L L F+H+P
Sbjct: 1010 PEDQKRKTFSFDTSKSSSLLKKLYRFKHDP 1039
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 118 LPDSARLASALEAFRHNPAD 59
LPD RL S + A R PAD
Sbjct: 748 LPDLERLISRVHAGRSKPAD 767
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 23.4 bits (48), Expect = 8.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 124 ISLPDSARLASALEAFRHNP 65
++LP SA+L ++A ++NP
Sbjct: 309 VALPQSAKLFQKVKALKNNP 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,255
Number of Sequences: 5004
Number of extensions: 25342
Number of successful extensions: 83
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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