Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0322
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.28
07_03_0846 - 21983581-21986055 29 0.65
07_03_0626 + 20060013-20060273,20061017-20061274 27 2.6
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 2.6
08_02_1485 - 27466761-27467753 27 3.5
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 3.5
01_05_0118 + 18335065-18335553 27 3.5
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 27 4.6
06_01_0655 + 4742267-4742531,4743313-4744136 27 4.6
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 4.6
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 27 4.6
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 26 6.1
01_01_0785 - 6076089-6077615 26 6.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 26 8.0
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 96 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 230
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 0.65
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 238 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 89
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 108 RLGWLRP*RRSGIIP 64
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 115 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 219
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 154 PPDSRGSTVSISLPDSARLASALEAFRHNPA 62
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 147 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 245
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 105 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 233
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 195 KRETRRRSPFGSRRSMLSVFS*HVHH 272
+R RRR+P R++M+ V + H HH
Sbjct: 73 RRRRRRRAPRRRRKAMMPVRTYHHHH 98
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 238 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 92
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 196 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 71
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 45 WCEVPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 179
W VPSA L +GKD+L +ES G F S
Sbjct: 357 WLRVPSARDVFAIGDCSGFLESTGKDVLPALAQESKGISLAGFVS 401
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -2
Query: 163 CLEPPDSRGSTVSISLPDSARLASAL----EAFRHNPADGTSHHRPLG 32
C E RG+ + +L RLA AL EA R +PA+G +H R G
Sbjct: 245 CPESAACRGNRAA-ALAGLGRLADALRDCEEAVRLDPANGRAHSRLAG 291
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 115 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 222
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETRRRS 218
K+ AS A G D P R GG K+ S + SKR + R+
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERN 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,136,653
Number of Sequences: 37544
Number of extensions: 207146
Number of successful extensions: 665
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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