Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0322
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.51 
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.68 
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     29   1.2  
SB_29237| Best HMM Match : I-set (HMM E-Value=0)                       28   2.1  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         27   2.7  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.7  
SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)             27   4.8  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    26   6.3  
SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)                26   8.3  
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     26   8.3  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)             26   8.3  
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)                     26   8.3  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          26   8.3  
SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               26   8.3  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)                      26   8.3  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 256 EKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDS 143
           E  DS  ++DP G+RR++  F  E R V    L+  D+
Sbjct: 98  EFMDSPPIKDPPGVRRKIEEFTIEQRAVNKRRLDLLDT 135


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 312  PRHRTELYPDLRSRD-ARVKKKPIASISA 229
            P+HR EL+PD   R  AR +K P++  S+
Sbjct: 1230 PKHRDELHPDTTKRGRARAEKTPVSMSSS 1258


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 297  ELYPDLRSRDARVKKKPIASISAIQMGFDVASRVLNAKRD 178
            E    LR  +A+VK+KP+    AI    D+   VLNAK +
Sbjct: 919  EFRVQLRRLEAQVKQKPVQYKDAIVDCVDLKDDVLNAKNE 958


>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
          Length = 869

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = -2

Query: 214 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGTSHHRPL 35
           + R  +FE  + L+K+  LE  + R   ++ +L D  ++  +L+  R++PA+  S    +
Sbjct: 632 KERFIQFENGSLLIKNIKLED-EGRYYCIAGNLADFKQITISLKVVRNSPAEALSSTASM 690

Query: 34  GR 29
           GR
Sbjct: 691 GR 692


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -2

Query: 226  PNGLRRRVSRFECET----RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 77
            PN LR R S F         L    CL PP++ G    I L D + LA    A+
Sbjct: 1246 PNDLRGRWSDFFSNLFQLEHLELDRCLRPPNAEGKPWLIILSDGSDLAYGFAAY 1299


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 202 SRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 59
           +R+  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 35  ARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


>SB_13676| Best HMM Match : Spindle_assoc (HMM E-Value=7.2)
          Length = 259

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = -2

Query: 235 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADG 56
           L +P+GL+ + S      + +    ++  ++  +T +  L D   L   +  F HNP   
Sbjct: 70  LSEPSGLKEQNSEKVGAAKPLLKPAIQTTNAEDATETTKLQDICDLFEKIVDFNHNPTSE 129

Query: 55  TSHHR 41
           ++  R
Sbjct: 130 SAKRR 134


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 45  WCEVPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 194
           + E+ ++   L  S +E    E+G +  +VEPR  G S     T+ +S S
Sbjct: 308 FAEISTSDGGLERSDSEMRENEAGDEKTSVEPRSDGVSTSSQDTAGLSES 357


>SB_41008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 223 NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 101
           NG+R  +  + C  +     C  P +S    +SIS+    R
Sbjct: 39  NGIRHEMHSYSCPPKQKLHICTRPVESSAKYISISVTSRGR 79


>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
          Length = 275

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 132 VEPRESGGSKQCDFTSRVSHSKRETRRRSPFG 227
           +EP  +  S  C+F+SR+      T+RR PFG
Sbjct: 1   MEPAATPPSSSCEFSSRLL-----TKRRCPFG 27


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 RLASALEAFRHNPADGTSHHRPLGRVHEP 17
           RLA  LE +  +  D T+HH+  G   +P
Sbjct: 300 RLAERLEQYSKDNPDATTHHQVYGGEDKP 328


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 154 PPDSRGSTVSISLPDSARLASALEAFRHNPAD 59
           PP    +   +S P S R+ +AL  FR NP D
Sbjct: 524 PPQEIDAVYKLSQPTSRRVKAALRGFR-NPHD 554


>SB_24049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 205 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHN 68
           +S  EC++R VK  CL+       +V IS  D A + +  +   +N
Sbjct: 32  ISYAECDSRRVKVRCLDTNQCVKGSVVISNGDKAYVKACAKRCDYN 77


>SB_12162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 87  KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 212
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 221 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 262


>SB_11107| Best HMM Match : Plasmodium_HRP (HMM E-Value=10)
          Length = 296

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 121 SLPDSARLASALEAFRHNPADGTSHHRPL 35
           SLP++AR  S     RHN    T+ H  L
Sbjct: 107 SLPNTARHNSLTNTTRHNSLTNTTRHNSL 135



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 121 SLPDSARLASALEAFRHNPADGTSHHRPL 35
           SLP++AR  S     RHN    T+ H  L
Sbjct: 242 SLPNTARHNSLTNTTRHNSLTNTTRHNSL 270


>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
          Length = 638

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 138 PRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFS*HVHHGSEGPDITQFDVGAR 317
           PRES         S +  +K     RS FGSR     V +  + H  E P++ +  + + 
Sbjct: 144 PRESDIKPDVGTLSSIETNKYLVSARSLFGSRCQSRYVVTKSIPHVIENPNLIKVSLFSA 203

Query: 318 NS 323
           N+
Sbjct: 204 NA 205


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 163 CLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGTSHHRP 38
           C + P   G   S  +PDS+  AS+  A+ H+P  G  +++P
Sbjct: 98  CADNPHPLGME-SGGIPDSSITASSSFAYTHSPHFGRLNNQP 138


>SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 RLASALEAFRHNPADGTSHHRPLGRVHEP 17
           RLA  LE +  +  D T+HH+  G   +P
Sbjct: 111 RLAERLEQYSKDNPDATTHHQVYGGEDKP 139


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 87   KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 212
            K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 1030 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 1071


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 RLASALEAFRHNPADGTSHHRPLGRVHEP 17
           RLA  LE +  +  D T+HH+  G   +P
Sbjct: 358 RLAERLEQYSKDNPDATTHHQVYGGEDKP 386


>SB_9526| Best HMM Match : Big_1 (HMM E-Value=1.8)
          Length = 649

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 87  KAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 212
           K + + AE+G D+L         ++Q   TS++  ++++TRR
Sbjct: 249 KMDTANAENGVDVLKTSASMVFNNEQFSATSQIKGTEKDTRR 290


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 RLASALEAFRHNPADGTSHHRPLGRVHEP 17
           RLA  LE +  +  D T+HH+  G   +P
Sbjct: 455 RLAERLEQYSKDNPDATTHHQVYGGEDKP 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,806
Number of Sequences: 59808
Number of extensions: 223887
Number of successful extensions: 783
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)