Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0322
(326 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 2.2
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 3.0
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS... 27 3.9
At4g35730.1 68417.m05071 expressed protein contains Pfam profil... 26 6.8
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy... 26 6.8
At1g14740.1 68414.m01762 expressed protein 26 6.8
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy... 25 9.0
At4g03000.2 68417.m00408 expressed protein contains similarity t... 25 9.0
At4g03000.1 68417.m00407 expressed protein contains similarity t... 25 9.0
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 25 9.0
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 25 9.0
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 25 9.0
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 88 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 228
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 168 DFTSRVSHSKRETRRRSPFGSRRSMLSVFS*HVHH 272
D + R S SKR+ R SP SRR +S S H H
Sbjct: 831 DDSKRKSSSKRKNRSPSPGKSRRRHVSSRSPHSKH 865
>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
/ heat shock transcription factor, putative (HSTF5)
identical to heat shock transcription factor 5 (HSF5)
SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
profile: PF00447 HSF-type DNA-binding domain
Length = 374
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 39 GRWCEVPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 170
G W ++ +K + ++ + GKD LT+E E G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329
>At4g35730.1 68417.m05071 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 430
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 148 DSRGSTVSISLPDSARLASALEAFRHN 68
DS G V LPD LA+ EA RH+
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHS 425
>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 544
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 182 RFAFKTRDATSKPIWIAEID 241
R A T AT PIW+ EID
Sbjct: 398 RSALDTLGATGLPIWLTEID 417
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 51 EVPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 218
E+ + LC N+ K SL + GK+++T S K + DF + + ++R++
Sbjct: 69 ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126
>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 576
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 182 RFAFKTRDATSKPIWIAEID 241
R A T AT PIW+ EID
Sbjct: 429 RSALDTFGATGLPIWLTEID 448
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 78 NASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 245
N+ AS A GK++ +V G+K TS VS K + R+ +ML
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRKGRTKKEMAML 326
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 78 NASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 245
N+ AS A GK++ +V G+K TS VS K + R+ +ML
Sbjct: 272 NSKNPHASGATPGKEVFSVSTASGEGTKSASLTS-VSDEKLVSCRKGRTKKEMAML 326
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 145 SRGSTVSISLPDSARLASALEAFRHNPADGTSHHRPLGR 29
SRG + S++L F ++P G SHH P GR
Sbjct: 119 SRGRGTGAAGSSSSQLQHNSGPF-NSPRGGVSHHNPTGR 156
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +3
Query: 141 RESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFS*HVHHGSEGPDITQ 299
R GG K S+ S++ET++ + + V V HG+ G ++ +
Sbjct: 1462 RMKGGRKSQTAISKFKGSEKETQKTNSHQKEEKSIQVLLLLVQHGANGLNLLE 1514
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 79 TPLRPKPA*PNPARICS 129
+P+RP PA P+P RI S
Sbjct: 274 SPVRPTPAPPSPPRISS 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,327
Number of Sequences: 28952
Number of extensions: 146644
Number of successful extensions: 432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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