Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0320
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    30   2.2  
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509...    28   6.7  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   8.8  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   8.8  

>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -2

Query: 722 ASAPS-IFQGWLLRQVSRCTLLSGFRL---PWPPSCCHER 615
           A+AP  +  G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 54  AAAPRFMLDGYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>06_03_0836 -
           25249491-25249511,25249883-25250050,25250721-25250920,
           25251000-25251324,25251981-25252045,25252231-25252552,
           25252650-25252730
          Length = 393

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 468 TPAYSNDEAGDLMTCQVGQFW*AELALWDEPNVV 569
           T  Y+N+    ++ C +G+FW  EL   ++P+V+
Sbjct: 168 TETYTNNHQNAIIVCPLGKFWRVELQR-EQPDVL 200


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 KSIVGTGYRGERLIEPSSSWFRPKFPSG 356
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 454 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 293
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,255
Number of Sequences: 37544
Number of extensions: 477984
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)