Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0320
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 576 RLKLRLVHPTAPVLLTKIGPLGTSSDLRLHRSSKPE 469
           R   R  HP     +TK+GP      LRL + S PE
Sbjct: 311 RRGFRAQHPIISTQMTKVGPPSADISLRLKKLSAPE 346


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 592 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KMDGA 717
           W T+  V +S Q+ G   +R P+R + R     + P K++ A
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMKIEFA 50


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 592 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KMDGA 717
           W T+  V +S Q+ G   +R P+R + R     + P K++ A
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMKIEFA 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,496
Number of Sequences: 27780
Number of extensions: 378890
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)