Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0320
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   4.2  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   7.4  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   7.4  
At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    27   9.8  
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea...    27   9.8  

>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 520 PTWHVIRSPASSFE*AGVLTHLKFENRLRSFR 425
           P   V + PAS+FE + V T  +FE   RSFR
Sbjct: 282 PKKSVRKVPASNFESSSVQTSFEFEKPKRSFR 313


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 577 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 678
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 577 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 678
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 189 WDPKDGELCLVRSKSGET-LMEDVAILTCKSIVGTGYRGERLIEPSSSWFRPK 344
           W  ++ E  +V+ +SG+  L+     +T K  VGT   GE +   +SSW R +
Sbjct: 160 WTQEEFESHVVKERSGKRPLLTGEVYVTLKEGVGT--LGELVFTDNSSWIRSR 210


>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
           family protein similar to unknown protein (pir||T04661);
           contains Pfam PF00400: WD domain, G-beta repeat (4
           copies, 2 weak)|8683726|gb|AV524198.1|AV524198
          Length = 1124

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -3

Query: 322 DGSISLSPL-YP--VPTIDLHVRIATSS 248
           +  IS+SPL YP  VPT+D H+ +AT S
Sbjct: 414 ENKISVSPLPYPMVVPTMDPHMTVATFS 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,719
Number of Sequences: 28952
Number of extensions: 365361
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)