Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0318
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    64   1e-12
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    56   2e-10
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    50   1e-08
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    38   5e-05

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 63.7 bits (148), Expect = 1e-12
 Identities = 29/57 (50%), Positives = 36/57 (63%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQ 172
           CMW E V+D ++ SRVWPRA+A AERLW + S    Q   R   H  R+ ARGI A+
Sbjct: 522 CMWGEYVDDSSVESRVWPRAAAAAERLWTNPSDYVKQTERRFYRHRERLVARGIHAE 578


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 56.0 bits (129), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQA-AYQVYSRLEEHTCRMNARGIR 166
           C+W+E V   ++ +R+WPR++A AER+W   S    Y +Y+RL   + R+ +RGIR
Sbjct: 511 CLWSEQVGPDSLETRIWPRSAAFAERIWSDPSAGDDYDIYTRLVSFSDRLKSRGIR 566


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHES------QAAYQVYSRLEEHTCRMNARGI 163
           C+W+E  ++ ++ +R+WPRA+A AER+W               VY+RL  H  R+ ARG+
Sbjct: 553 CLWSEQFDETSLDTRLWPRAAAFAERVWSDPQLDVTSFTIQEDVYTRLNTHRDRLVARGL 612

Query: 164 RAQP------PSGPGFCL 199
            A+          PG CL
Sbjct: 613 GAEAMWPVWCAQNPGMCL 630


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRA 169
           +WTE  +  ++ +R+WPRA+A+ E LW   +    +   R+     R+ + GI +
Sbjct: 521 LWTEQADSASVDTRLWPRAAALGEVLWSEPTNTWREAEQRILVQRERLISLGINS 575


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,797
Number of Sequences: 336
Number of extensions: 2955
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)