Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0318
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1000 - 23220878-23221821,23222164-23223001                       50   1e-06
03_02_0187 - 6248226-6249226,6249296-6250148                           45   6e-05
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    32   0.45 
07_01_0746 + 5714443-5714580,5715175-5715261,5715400-5715657,571...    30   1.8  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   3.2  
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183...    28   5.5  
06_01_0122 + 944353-944451,944547-945080                               28   5.5  
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605...    27   9.7  

>07_03_1000 - 23220878-23221821,23222164-23223001
          Length = 593

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLW-GHESQAAYQVYS----RLEEHTCRMNARGIRA 169
           MWTE V+   +  RVWPRASA+AE LW G+      + Y+    RL +   RM  RG+RA
Sbjct: 515 MWTEQVDAAVLDGRVWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVRA 574

Query: 170 QP 175
           +P
Sbjct: 575 EP 576


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLW-GHESQAAYQVYS----RLEEHTCRMNARGIRA 169
           +W+E  ++  + +R+WPRA+A AE LW G++     + Y+    RL +   RM  RGIRA
Sbjct: 539 LWSEQSDETVLDARLWPRAAAAAETLWSGNKGSNGKKRYANATDRLNDWRHRMVERGIRA 598

Query: 170 QP 175
           +P
Sbjct: 599 EP 600


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVA 73
           CMW E  +  ++   +WPRA+A A
Sbjct: 422 CMWGETADTSDVQQTIWPRAAAAA 445


>07_01_0746 +
           5714443-5714580,5715175-5715261,5715400-5715657,
           5715765-5715929,5716106-5716159,5716318-5716464,
           5716735-5717112
          Length = 408

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 38  MSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRA-QPPSG 184
           M+  W  A+A A  LW   ++ A    +R+  H  R+N   +++ + P G
Sbjct: 1   MAAAWVLAAAAALALWAAAAEGARSPAARVHRHLKRLNKPAVKSIESPDG 50


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 165  RMPRAFILHVCSSKREYT*YAACDSWPHS 79
            R  R   LH+C SK  Y  Y+  DSW +S
Sbjct: 3014 RYARRLFLHLCGSKTHY--YSVRDSWQYS 3040


>08_02_0113 -
           12715888-12716181,12717443-12717602,12718327-12718368,
           12718443-12718465,12718616-12720653,12720736-12720965,
           12722207-12722329,12722438-12723010,12724684-12724733,
           12726828-12726923,12726987-12727394,12727609-12727795
          Length = 1407

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 374 LSTCYELFTMIGHVLNYKDITGHVNYCFTEY 466
           L +CY     +G +  YK + G V+Y   EY
Sbjct: 385 LLSCYRCLIYLGDLTRYKGLYGDVDYASREY 415


>06_01_0122 + 944353-944451,944547-945080
          Length = 210

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 401 MIGHVLNYKDITGHVNYCFTEYFHHS*IRSGKKIFKASSSKLERIHV*MSDL 556
           M+  ++ YKD +  +   + + F H  +   +K+    SS LE   +  SDL
Sbjct: 1   MLNPIVTYKDHSSALFRRYEKKFDHFNVEKNQKLLSVGSSNLESHEIESSDL 52


>08_02_1340 -
           26256768-26256999,26258105-26258774,26259273-26260555,
           26262403-26263499
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 100 GSISSILSLRGAHMQNERARHTRPATQWPWLLPR 201
           G  +S+ ++ G  +   RA   RPA  W WL+P+
Sbjct: 235 GLATSLAAVEGRRLGAARAGR-RPAMSWAWLVPQ 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,015
Number of Sequences: 37544
Number of extensions: 281086
Number of successful extensions: 526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)