Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0318
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              42   4e-04
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              30   1.4  
SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)         29   2.4  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       29   3.2  
SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)                   28   7.5  
SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQA-AYQVYSRLEEHTCR 145
           CMW E V+  NI++R WPRA A+AERLW  +S       Y+R+ EH CR
Sbjct: 560 CMWGEFVDGTNILARTWPRALAIAERLWSSKSTTDMTSAYARIWEHRCR 608


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLW 85
           MW E+V  + I SR+WPR +A+AER W
Sbjct: 258 MWGELVTPLTIDSRIWPRTAAIAERFW 284


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 5    MWTEVVNDMNIM-SRVWPRASAVAERLW 85
            +WTE V   + M S ++PR  AVAER W
Sbjct: 1502 LWTETVRTADQMDSMIFPRLLAVAERAW 1529


>SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)
          Length = 403

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 5   MWTEVVNDMNIM-SRVWPRASAVAERLW 85
           +WTE V   + M S V+PR  A+AER W
Sbjct: 183 LWTETVRTADQMDSMVFPRLLALAERAW 210


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 35  IMSRVWPRASAVAERLWGHESQAAYQVYSRLEEH 136
           ++S  W   SAVA R+W   SQ  Y+ ++R   H
Sbjct: 92  VLSAYWSDQSAVASRIW--HSQRQYKCHNRATTH 123


>SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)
          Length = 634

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 383 CYELFTMIGHVLNYKDITGHVNYCFTEYFHHS*IRSGKKIFKASSS 520
           C E+     H+L  K I  +VN+C T +   S +    K+ K  +S
Sbjct: 580 CEEVLDSKPHLLTSKTIYKNVNFCVTRWLRRSSLFKLPKVRKVQNS 625


>SB_50765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 56  RASAVAERLWGHESQAAYQVYSRLEEH---TCRMNARGI 163
           RA A+   L+G ES   YQ +SR   H   TC    RGI
Sbjct: 216 RAVALTALLYGCESWTVYQRHSRKLNHFHTTCLRKLRGI 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,264,800
Number of Sequences: 59808
Number of extensions: 340080
Number of successful extensions: 527
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)