Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0318
         (644 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118361-1|AAM48390.1|  622|Drosophila melanogaster RE07082p pro...    57   2e-08
AE014298-1223|AAF46406.1|  622|Drosophila melanogaster CG1787-PA...    57   2e-08
AY118626-1|AAM49995.1|  606|Drosophila melanogaster RE27784p pro...    52   5e-07
AY061018-1|AAL28566.1|  383|Drosophila melanogaster HL03862p pro...    52   5e-07
AE014296-822|AAN11597.1|  383|Drosophila melanogaster CG1318-PC,...    52   5e-07
AE014296-821|AAN11596.1|  606|Drosophila melanogaster CG1318-PD,...    52   5e-07
AE014296-820|AAG22248.1|  622|Drosophila melanogaster CG1318-PB,...    52   5e-07
AE014296-819|AAF47881.1|  622|Drosophila melanogaster CG1318-PA,...    52   5e-07
AY113418-1|AAM29423.1|  660|Drosophila melanogaster RE17456p pro...    46   4e-05
AY061037-1|AAL28585.1|  359|Drosophila melanogaster HL07462p pro...    46   4e-05
AF323977-1|AAL55992.1|  660|Drosophila melanogaster fused lobes ...    46   4e-05
AE013599-1505|AAM68692.1|  660|Drosophila melanogaster CG8824-PC...    46   4e-05
AE013599-1504|AAM68691.2|  673|Drosophila melanogaster CG8824-PB...    46   4e-05
BT030308-1|ABN49447.1|  693|Drosophila melanogaster RE02357p pro...    29   5.4  
BT012335-1|AAS77460.1|  410|Drosophila melanogaster AT15134p pro...    29   5.4  
AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB...    29   5.4  
AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA...    29   5.4  
AJ006524-1|CAA07085.1|  914|Drosophila melanogaster coatomer, be...    28   9.4  
AJ006523-1|CAA07084.1|  914|Drosophila melanogaster coatomer, be...    28   9.4  

>AY118361-1|AAM48390.1|  622|Drosophila melanogaster RE07082p
           protein.
          Length = 622

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRA 169
           CMW+E V+  ++ SR+WPRA A AER+W +   +A     R   +  R+ ARGI A
Sbjct: 551 CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLLARGIHA 606


>AE014298-1223|AAF46406.1|  622|Drosophila melanogaster CG1787-PA
           protein.
          Length = 622

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRA 169
           CMW+E V+  ++ SR+WPRA A AER+W +   +A     R   +  R+ ARGI A
Sbjct: 551 CMWSEYVDQNSLESRIWPRAGAAAERMWSNPKSSALLAQRRFYRYRERLLARGIHA 606


>AY118626-1|AAM49995.1|  606|Drosophila melanogaster RE27784p
           protein.
          Length = 606

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 528 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 586

Query: 185 PGFCL 199
           P +CL
Sbjct: 587 PQWCL 591


>AY061018-1|AAL28566.1|  383|Drosophila melanogaster HL03862p
           protein.
          Length = 383

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 289 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 347

Query: 185 PGFCL 199
           P +CL
Sbjct: 348 PQWCL 352


>AE014296-822|AAN11597.1|  383|Drosophila melanogaster CG1318-PC,
           isoform C protein.
          Length = 383

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 289 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 347

Query: 185 PGFCL 199
           P +CL
Sbjct: 348 PQWCL 352


>AE014296-821|AAN11596.1|  606|Drosophila melanogaster CG1318-PD,
           isoform D protein.
          Length = 606

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 528 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 586

Query: 185 PGFCL 199
           P +CL
Sbjct: 587 PQWCL 591


>AE014296-820|AAG22248.1|  622|Drosophila melanogaster CG1318-PB,
           isoform B protein.
          Length = 622

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 528 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 586

Query: 185 PGFCL 199
           P +CL
Sbjct: 587 PQWCL 591


>AE014296-819|AAF47881.1|  622|Drosophila melanogaster CG1318-PA,
           isoform A protein.
          Length = 622

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLWGHESQAAYQVYSRLEEHTCRMNARGIRAQPPSG 184
           +W+E +++  + +R WPRASA+AERLW + ++   Q  SRL  H  R+   G+ A+    
Sbjct: 528 IWSEQIDEHTLDNRFWPRASALAERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQ- 586

Query: 185 PGFCL 199
           P +CL
Sbjct: 587 PQWCL 591


>AY113418-1|AAM29423.1|  660|Drosophila melanogaster RE17456p
           protein.
          Length = 660

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQ------AAYQVYSRLEEHTCRMNARGI 163
           CMWTE V++  + +R+WPR +A+AERLW   S           V+ R+     R+   GI
Sbjct: 583 CMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVELGI 642

Query: 164 RAQ 172
           RA+
Sbjct: 643 RAE 645


>AY061037-1|AAL28585.1|  359|Drosophila melanogaster HL07462p
           protein.
          Length = 359

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQ------AAYQVYSRLEEHTCRMNARGI 163
           CMWTE V++  + +R+WPR +A+AERLW   S           V+ R+     R+   GI
Sbjct: 282 CMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVELGI 341

Query: 164 RAQ 172
           RA+
Sbjct: 342 RAE 344


>AF323977-1|AAL55992.1|  660|Drosophila melanogaster fused lobes
           protein.
          Length = 660

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQ------AAYQVYSRLEEHTCRMNARGI 163
           CMWTE V++  + +R+WPR +A+AERLW   S           V+ R+     R+   GI
Sbjct: 583 CMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVELGI 642

Query: 164 RAQ 172
           RA+
Sbjct: 643 RAE 645


>AE013599-1505|AAM68692.1|  660|Drosophila melanogaster CG8824-PC,
           isoform C protein.
          Length = 660

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQ------AAYQVYSRLEEHTCRMNARGI 163
           CMWTE V++  + +R+WPR +A+AERLW   S           V+ R+     R+   GI
Sbjct: 583 CMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVELGI 642

Query: 164 RAQ 172
           RA+
Sbjct: 643 RAE 645


>AE013599-1504|AAM68691.2|  673|Drosophila melanogaster CG8824-PB,
           isoform B protein.
          Length = 673

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   CMWTEVVNDMNIMSRVWPRASAVAERLWGHESQ------AAYQVYSRLEEHTCRMNARGI 163
           CMWTE V++  + +R+WPR +A+AERLW   S           V+ R+     R+   GI
Sbjct: 596 CMWTEQVDENQLDNRLWPRTAALAERLWTDPSDDHDMDIVPPDVFRRISLFRNRLVELGI 655

Query: 164 RAQ 172
           RA+
Sbjct: 656 RAE 658


>BT030308-1|ABN49447.1|  693|Drosophila melanogaster RE02357p
           protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 194 RSQGHWVAGRVCRARSFCMCAPLSESILDMLPVIRGPTVFQLQH 63
           R+Q  +  G +C      +C P++ S++D   +     + Q+QH
Sbjct: 280 RTQNPYSRGNICLNCCHILCGPMTPSLIDRRGIATDEFIQQMQH 323


>BT012335-1|AAS77460.1|  410|Drosophila melanogaster AT15134p
           protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 194 RSQGHWVAGRVCRARSFCMCAPLSESILDMLPVIRGPTVFQLQH 63
           R+Q  +  G +C      +C P++ S++D   +     + Q+QH
Sbjct: 292 RTQNPYSRGNICLNCCHILCGPMTPSLIDRRGIATDEFIQQMQH 335


>AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB,
           isoform B protein.
          Length = 750

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 194 RSQGHWVAGRVCRARSFCMCAPLSESILDMLPVIRGPTVFQLQH 63
           R+Q  +  G +C      +C P++ S++D   +     + Q+QH
Sbjct: 275 RTQNPYSRGNICLNCCHILCGPMTPSLIDRRGIATDEFIQQMQH 318


>AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA,
           isoform A protein.
          Length = 750

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 194 RSQGHWVAGRVCRARSFCMCAPLSESILDMLPVIRGPTVFQLQH 63
           R+Q  +  G +C      +C P++ S++D   +     + Q+QH
Sbjct: 275 RTQNPYSRGNICLNCCHILCGPMTPSLIDRRGIATDEFIQQMQH 318


>AJ006524-1|CAA07085.1|  914|Drosophila melanogaster coatomer,
           beta-prime subunit protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 496 FTTSDLGMVEIFSKTVIYMPSNIFVI 419
           F T D+G  EI+ +T+ + P+  FV+
Sbjct: 345 FATKDMGACEIYPQTIAHNPNGRFVV 370


>AJ006523-1|CAA07084.1|  914|Drosophila melanogaster coatomer,
           beta-prime subunit protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 496 FTTSDLGMVEIFSKTVIYMPSNIFVI 419
           F T D+G  EI+ +T+ + P+  FV+
Sbjct: 345 FATKDMGACEIYPQTIAHNPNGRFVV 370


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,345,383
Number of Sequences: 53049
Number of extensions: 491658
Number of successful extensions: 745
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)