Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0318
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    69   3e-12
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    29   3.7  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    29   3.7  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLW--GHESQAAYQVYSRLEEHTCRMNARGIRAQPP 178
           +W E+V++ NI +R+WPRASA AERLW    ++Q A   + R+ E  CR+ +RG R QP 
Sbjct: 476 IWGELVDNTNIEARLWPRASAAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQPN 535

Query: 179 SGPGFC 196
           + P +C
Sbjct: 536 NNPDYC 541


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +2

Query: 5   MWTEVVNDMNIMSRVWPRASAVAERLW--GHESQAAYQVYSRLEEHTCRMNARGIRAQPP 178
           +W E+V++ NI +R+WPRASA AERLW    ++Q A   + R+ E  CR+ +RG R QP 
Sbjct: 476 IWGELVDNTNIEARLWPRASAAAERLWSPAEKTQRAEDAWPRMHELRCRLVSRGYRIQPN 535

Query: 179 SGPGFC 196
           + P +C
Sbjct: 536 NNPDYC 541


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 446 NYCFTEYFHHS*IRSGKKIFKASSSKLERIHV*MSDLWVYNLL 574
           NYC+T YF        +    +S S L  IH    + +VYN++
Sbjct: 196 NYCYTPYFELKLSSEAQTFCASSGSNLVSIHSANENRFVYNII 238


>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 223 ERKNISSLFNKDVTIILAQV*FRIFSTYLVQIQILVIPKI 342
           +RK + SL  KD+  ++    F + S YL Q  I+V+PKI
Sbjct: 156 DRKTVGSLLTKDLADLVKADDFVLNSEYL-QTVIVVVPKI 194


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 223 ERKNISSLFNKDVTIILAQV*FRIFSTYLVQIQILVIPKI 342
           +RK + SL  KD+  ++    F + S YL Q  I+V+PKI
Sbjct: 156 DRKTVGSLLTKDLADLVKADDFVLNSEYL-QTVIVVVPKI 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,988
Number of Sequences: 27780
Number of extensions: 270439
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)