Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0317
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    27   1.7  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.1  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
 Frame = +3

Query: 174 SQMPRH----LISDAHEWINEIPTVPIYYLANHSQGNGLGRI 287
           S +PRH    L+   H W  E  + P+Y+  N     G G +
Sbjct: 211 SDLPRHDREGLLELTHNWGTEKESGPVYHNGNDGDEKGYGHV 252


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 612 HLRYSLTDVPPQSNSPPGS-VLEPDHAGVLNGDERFATSPLCTLGTKHRAPADIIDRAP 439
           HLR S+  V   S SPP S  L+P H+ + N     +  P   LG++        D  P
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKPIHS-LSNPSTASSLEPSSPLGSEDECHPPTSDMQP 226


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 177 GYLKRVIVTPAVYPRLLEFLHVDIQST 97
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 171  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 79
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = -1

Query: 350 PLMSPYNARLE------SSSTGSSFPADSPKPVPLAVVR*IVDR 237
           P  + YN RLE       S T S  P D  +PVP  +V  + +R
Sbjct: 6   PSDTEYNQRLERWSERLKSQTISHLPTDYSRPVPSRLVEAVFER 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,648
Number of Sequences: 5004
Number of extensions: 53079
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)