Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0317
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   1.8  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   4.1  
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           29   4.1  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    29   4.1  
05_03_0157 - 9027777-9027862,9028142-9029357                           28   5.4  
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512...    28   7.1  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   9.4  
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901...    27   9.4  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 195 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 94
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 499 TTLHAWNETPCARRYY 452
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = +2

Query: 479 VPSVQSGD--VAKRSSPFKTPA*----SGSRTLPGGEFDWGGTSVKE*RRCPKA 622
           VP V + D  VA+ S P+ +P+     SGS   P G  D GG ++   R CP A
Sbjct: 739 VPRVMNDDNGVAEGSPPWSSPSTRRRLSGSSAKPDGHKDGGGATLPS-RGCPAA 791


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 585 PPQSNSPPGSVLEPDHAGVLNGDERFATSPLCTLGTKH 472
           P  +NS P +V +PD   +LNGDE   T  L +   +H
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDEIQQTFELNSQEIQH 776


>05_03_0157 - 9027777-9027862,9028142-9029357
          Length = 433

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -3

Query: 558 SVLEPDHAGVLNGDERFATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRR 382
           ++   D  G   GDERFA     +   K      +    PL   R++  T +VV F  R
Sbjct: 179 ALFREDSVGYRGGDERFAMRRFLSQTGKWDKLVGLPSSLPLHRRRMNTSTQEVVAFAGR 237


>01_05_0359 +
           21350580-21350829,21350990-21351064,21351156-21351236,
           21352633-21352830,21352930-21353019,21353096-21353253,
           21353350-21353472,21354989-21355096,21355530-21355826
          Length = 459

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 522 GDERFATSPLCTLGTKHRAPADIIDRAPLPPNR 424
           G++   T P    GTK R PADI   A LPPN+
Sbjct: 9   GEKAVFTIPPELAGTKSRCPADI--PANLPPNQ 39


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 377 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVV 255
           AKR+PT  T    P  AR  +++   +F   +P P P +V+
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVI 514


>01_06_1759 +
           39689410-39689573,39689728-39689923,39690014-39690103,
           39690221-39690277,39690391-39690460,39690747-39690811,
           39691408-39691462,39691704-39691831,39691919-39691950,
           39692205-39692274,39692723-39692824,39692921-39693010,
           39693084-39693232,39693620-39693731,39695332-39695412,
           39695481-39695705,39695815-39695937,39696021-39696137
          Length = 641

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 621 ALGHLRYSLTDVPPQSNSPPGSVLEP 544
           ALGH+   L + P ++  PP   ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,039
Number of Sequences: 37544
Number of extensions: 408310
Number of successful extensions: 1413
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)