Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0316
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    31   0.25 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.58 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.77 
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   5.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   7.1  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.1  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   9.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.4  

>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -2

Query: 666 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSYKYIQFLR 487
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+      + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 486 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 397
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 405 SGCGRCRVWSMFVRYVRFSELVF*YNAASKTVYIY 509
           +GCG+  VW  +VR+V F E    + A   ++Y+Y
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRF-ANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 588 ARKIRGRPENAGPDPVRNVRRFSRV 514
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 663 NWHGQGESDCLIKQSIAMA---LAGVDA 737
           N HG   +DC+I  S A A   +AG+DA
Sbjct: 341 NTHGSKHTDCIITSSEAAANRFMAGIDA 368


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 714 SQCFV*LDSRIPLV--RASSELTVERRSYRI 628
           S CF   DSRIPLV  + S+  T++ R+Y +
Sbjct: 81  SPCFPNSDSRIPLVNWKTSTNPTLQVRAYML 111


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 600 TRLTARKIRGRPENAGPDPVRNVRRFSRVSYKYIQFL 490
           +RL+ +K+ G   N+GP  V +      ++Y Y+  L
Sbjct: 431 SRLSDKKVAGISPNSGPYKVDSTHEARIINYSYVDNL 467


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 184 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 47
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 442 TNIDQTRHRPHPLPVQTRHAPV 377
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 443  ALCSF*RVSILI*CGLKNCIYLYDT 517
            AL S   ++I + C +K+C YL+D+
Sbjct: 956  ALISLSSLTITVFCAIKSCRYLHDS 980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,199
Number of Sequences: 5004
Number of extensions: 73411
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)