Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0316
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-11|AAB94230.1| 354|Caenorhabditis elegans Prion-like-(... 30 1.7
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 30 2.2
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.9
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 5.1
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 5.1
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 5.1
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 5.1
AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine re... 29 5.1
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 28 6.7
>AF039047-11|AAB94230.1| 354|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 51
protein.
Length = 354
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 436 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWV 263
+D + P P P Q H P +R NP P+ + P+ L L A H+GD
Sbjct: 53 VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGDAPIRMA 110
Query: 262 RTGRHLHVHPS 230
TG+ HPS
Sbjct: 111 YTGQPTQ-HPS 120
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 178 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPG 2
C++ P+L I T+ +RQ + P+L +A H + FK E T+PG
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIPG 138
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 451 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 338
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 468 LTR*NEHNARTSTRPGTGRIRFPSKPDT 385
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 468 LTR*NEHNARTSTRPGTGRIRFPSKPDT 385
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 468 LTR*NEHNARTSTRPGTGRIRFPSKPDT 385
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 468 LTR*NEHNARTSTRPGTGRIRFPSKPDT 385
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine
receptor, class w protein6 protein.
Length = 391
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 594 LTARKIRGRPENAGPDPVRNVRRFSRVSYKYIQFLRPHYIKILTR*NEH 448
+T RKIR N DP ++ R+ Y + FL +++ L EH
Sbjct: 1 MTTRKIRPTTTNPKDDPDYDLERYYYGDYTHRNFLTDFFLRYLEFSGEH 49
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 592 KSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPTV*LNKALRWPSRVLTQCDFCPVL 759
++ R +F + H + PP G++R D GN + W +V++ DF +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGND-------MDWCMQVISSDDFREIL 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,012
Number of Sequences: 27780
Number of extensions: 431635
Number of successful extensions: 1197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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