Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0315
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    29   1.9  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.4  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.4  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    28   5.9  

>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 494 IPITRPRKSPVSLFFVTTSRAGSG*FARLLPSLDVVA-VSQAPSPESNPDSPLPVTTMVV 318
           IP+ R R +P    FV  S      F  +L SLD+VA +++    +      +PV+ +V 
Sbjct: 44  IPVWRKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTECLQEEKAMKIPVSEVVS 103

Query: 317 AETTI 303
            + T+
Sbjct: 104 PDNTL 108


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 413 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 312
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 404 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 297
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = -2

Query: 491 PITRPRKSPVSLF--FVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTT-MV 321
           P + P  SP      F   SR  +     L+ SLD +++++A +  S+    +P++T  +
Sbjct: 215 PSSSPPLSPADKADAFSRLSRRRTAVLNELISSLDSLSLTEALAASSSSPVTMPISTATM 274

Query: 320 VAETTIES**GRHLKDASPVLDMRSAKVIQIHQN*RLRTRGPPS 189
           +A + + S    H     P LD+   + +Q+ Q+  LR    PS
Sbjct: 275 IASSNLSS--NHHHHRLPPWLDV-GDRDLQLQQSSPLRFALSPS 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,917
Number of Sequences: 28952
Number of extensions: 270999
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)