Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0314
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    30   2.1  
05_05_0048 + 21884078-21884951,21885586-21885899                       28   8.4  

>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 308  CRPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 487
            C    +  +   D+ L+L R+  +      MLR    +TA+A  +++  K   E  ++NN
Sbjct: 1045 CAAAKSAAQSEHDKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNN 1104

Query: 488  FSIRY 502
             S+ Y
Sbjct: 1105 SSLEY 1109


>05_05_0048 + 21884078-21884951,21885586-21885899
          Length = 395

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = -2

Query: 704 GA*ETATTSKEG---SRRANYPLPARGGSDEK*RYGTLTRPRNR--NEYTLNIL-TRNNG 543
           GA  + TT  EG    RRA  P P  G SD++     L   R R   +Y   I  +  NG
Sbjct: 124 GASTSQTTGLEGVEVMRRAAAPAPDNGSSDKEEAARPLIGVRKRPWGKYAAEIRDSTRNG 183

Query: 542 GQVW 531
            +VW
Sbjct: 184 ARVW 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,028,573
Number of Sequences: 37544
Number of extensions: 400523
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)