Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0314
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1)...    29   4.0  
At4g10890.1 68417.m01772 expressed protein                             29   4.0  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    28   7.0  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   9.3  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.3  
At3g08650.2 68416.m01005 metal transporter family protein contai...    27   9.3  
At3g08650.1 68416.m01004 metal transporter family protein contai...    27   9.3  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   9.3  

>At5g57900.1 68418.m07243 SKP1/ASK1 interacting partner 1 (SKIP1) /
           SCF (Skp1-cullin-F-box) ubiquitin ligase identical to
           SKP1 interacting partner 1 GI:10716947 from [Arabidopsis
           thaliana], PMID:11387208
          Length = 300

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 434 CTDSAAHKCNYELFNRNNFSIRYWSGITAAAGTRLALHCSSLKYLKCTHSDYEAS*ESRI 613
           C+D A         N    +IR    +T A+ T++A  C SLK L  ++  +E S ++ +
Sbjct: 99  CSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYC-HEISHDTLV 157

Query: 614 VIFRH 628
           +I R+
Sbjct: 158 MIGRN 162


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 122 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 6
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 217 EPRSYSIIPCTKYQAAFLARFEHSNLFKVKLSAHLDTHR 333
           EP    ++ C K    F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 582 PITRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGSSP 710
           PI+ P KSP +    TTSP +   + +P          S SSP
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSP 66


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 85  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 219
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 592 LVIGMSTL*IF*RGTMEGKSGASSRGNSAPIAYTKIVAVKKL 467
           LVIG+ TL  F  G+  G S A S+G S  +  T  +AV  +
Sbjct: 200 LVIGIMTLHSFGEGSGVGVSFAGSKGFSQGLLVTLAIAVHNI 241


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 592 LVIGMSTL*IF*RGTMEGKSGASSRGNSAPIAYTKIVAVKKL 467
           LVIG+ TL  F  G+  G S A S+G S  +  T  +AV  +
Sbjct: 176 LVIGIMTLHSFGEGSGVGVSFAGSKGFSQGLLVTLAIAVHNI 217


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 329 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHKCNYELFNRNN 487
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K    L + ++
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSSLLSNSS 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,703
Number of Sequences: 28952
Number of extensions: 309533
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)