Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0313
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.78
07_03_0846 - 21983581-21986055 29 1.8
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 29 2.4
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 28 4.1
01_06_1777 + 39818212-39819696 28 4.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 5.5
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 28 5.5
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 28 5.5
06_01_1170 - 10002650-10004122 27 7.2
02_05_0814 - 31970558-31971126,31971242-31971413 27 7.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 7.2
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 9.6
06_01_0918 + 7083570-7083705,7083977-7084008 27 9.6
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.6
01_05_0118 + 18335065-18335553 27 9.6
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 232 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 90 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 239
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 340 VREEPQFRTFGSCTRPSGRWCEATIRGIILNAS-KAEASLAESGKDMLTVEPRESGGSKQ 164
+ P G RP+ +++IRGII S KA++SL + + +L + S +Q
Sbjct: 60 ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119
Query: 163 CDFTSRVSHS 134
T+ S S
Sbjct: 120 VKATTSRSFS 129
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.3 bits (60), Expect = 4.1
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Frame = +3
Query: 18 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 188
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 189 GSTVSISLPDSARLASALEAFRIIPRMVASHHRPL-GRVHEPNV 317
GSTVSI+LP ++ S+ A I + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>01_06_1777 + 39818212-39819696
Length = 494
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 341
+R T SI + + ++A +I+ RMV HHRP G + C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 241 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 68
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 67 TRASR 53
TRA+R
Sbjct: 64 TRAAR 68
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 27.9 bits (59), Expect = 5.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 319 RTFGSCTRPSGRWCEATIRGIILNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 152
R GS RP C A I+ + + AEA LA G D++ +G G+ Q D
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145
Query: 151 SRV 143
R+
Sbjct: 146 RRL 148
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/49 (46%), Positives = 25/49 (51%)
Frame = -2
Query: 354 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLS*TPLRPKPA*PNPAR 208
SNTA ER L A+ R LP AG S + LRPKP P PAR
Sbjct: 279 SNTAAKER------LTRAVNRVQK-LTLPKAGQS-SSLRPKPRDPAPAR 319
>06_01_1170 - 10002650-10004122
Length = 490
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPL 293
S GS + P +A LA+ALE R+ A H PL
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPL 334
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 297 GRAAGGAKLPSAGLS*TPLRPKPA*PNP 214
G GG PS+ S TP P P+ P P
Sbjct: 135 GGGGGGGSTPSSPSSPTPTTPNPSTPTP 162
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 213 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 109
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 181 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 83
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 539 GLWQPSVHSDELFDPSMSALPIIAKQNSP 453
GLW+PS H+ L P+ S L + +P
Sbjct: 10 GLWRPSAHAAALRAPASSVLSTTPPRQTP 38
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 72 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 251
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 223 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 95
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,604
Number of Sequences: 37544
Number of extensions: 310474
Number of successful extensions: 885
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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