Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0313
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    27   6.5  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/96 (20%), Positives = 40/96 (41%)
 Frame = +3

Query: 30   ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
            ++Y DL+      ++   S++    N  R++      + R +       PD  G  + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205

Query: 210  LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
              D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/96 (20%), Positives = 40/96 (41%)
 Frame = +3

Query: 30   ELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSIS 209
            ++Y DL+      ++   S++    N  R++      + R +       PD  G  + ++
Sbjct: 1147 QVYQDLKRVKFDRERLNGSLE-EQLNKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLN 1205

Query: 210  LPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNV 317
              D   LA+  E  ++    +  H R L + HE N+
Sbjct: 1206 ESDQQTLATLTEQIKVTQAEIELHRRDL-KKHESNL 1240


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = -1

Query: 271 TIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 119
           +++G I + +    ++    K ++  EP+E+   +  D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 298 RPSGRWCEATIRGIILNASKAEAS 227
           RPSG WC     G+ L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 337 REEPQFRTFGSCTRPSGRWCEATIRGIILNASKAEASLA 221
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTG--FHAAKADAEAA 288


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 141
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -1

Query: 298 RPSGRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 134
           RPSG WC     G     + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,234
Number of Sequences: 27780
Number of extensions: 240009
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)