Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0311
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
05_05_0272 - 23738514-23738817,23739382-23740748                       30   1.9  
07_03_0846 - 21983581-21986055                                         29   3.3  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    29   4.4  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    28   7.6  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   7.6  
01_06_1777 + 39818212-39819696                                         28   7.6  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 232 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 707 GHLRYS-LTDVPPQSNSPPGVSSNRITREF*T 799
           G  RY+ +TDVPP  N P  V  N IT EF T
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRT 429


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 90  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 239
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 340 VREEPQFRTFGSCTRPSGRWCEATIRGIILNAS-KAEASLAESGKDMLTVEPRESGGSKQ 164
           +   P     G   RP+    +++IRGII   S KA++SL +  + +L +    S   +Q
Sbjct: 60  ISPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQ 119

Query: 163 CDFTSRVSHS 134
              T+  S S
Sbjct: 120 VKATTSRSFS 129


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
 Frame = +3

Query: 18  RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 188
           RH   L  ++RS  D     KT  ++L    GL          +   L  SH L    + 
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203

Query: 189 GSTVSISLPDSARLASALEAFRIIPRMVASHHRPL-GRVHEPNV 317
           GSTVSI+LP   ++ S+  A  I      +  RPL GR   P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 590 YKEFLARG-ARKVTTGITGLWQPSVHSDVLFD 498
           YK F A G  RKV  GIT  + PS+  D+ FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>01_06_1777 + 39818212-39819696
          Length = 494

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 183 SRGSTVSISLPDSARLASALEAFRIIPRMVASHHRP-LGRVHEPNVRNCGSSRT 341
           +R  T SI +      +  ++A +I+ RMV  HHRP  G  +      C + RT
Sbjct: 399 TRKETFSILISGLCSESRFIDAAQIMERMVKGHHRPEAGEFNNVIEGLCSAGRT 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,070,007
Number of Sequences: 37544
Number of extensions: 501880
Number of successful extensions: 1344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)