Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0309
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   2.2  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.9  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 332 YFSISHLLLIFSRHFNDSRFINNAGCAVTLLHNTNDPSLI 451
           Y   SHLL   S  FN  +F  +  C     +  NDP ++
Sbjct: 263 YSKESHLLQHGSHSFNGKQFETSFNCLTPSENTVNDPQVL 302


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 221 ATKKKRSYLLLYINKIIYFAVKIKF*NLSSFTKV*LKYFSISHLLLIFSRHFND 382
           A K   +  L Y+ ++  F   I F  + S  K  ++ F ++  L   +RH ND
Sbjct: 177 ARKSYFTVALQYVVRVTSFRSSIDFIVIESICKFSIETFRLTDRLHESNRHIND 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,430
Number of Sequences: 5004
Number of extensions: 34609
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)