Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0309
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0123 - 927691-929223,930050-930268                               29   1.7  
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586...    29   1.7  
03_01_0221 + 1752500-1752868,1753301-1753436,1753850-1753989,175...    27   8.9  

>07_01_0123 - 927691-929223,930050-930268
          Length = 583

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 474 KILRNKKDIRLGSLVLWRRVTAQPALLINLE 382
           +I R ++  RLG  + WRR+TA   LL++++
Sbjct: 43  RIWRRRRQRRLGFFLQWRRLTATFCLLLSIQ 73


>04_01_0452 -
           5859262-5859465,5859618-5859661,5859753-5859954,
           5860905-5860949
          Length = 164

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 510 IVCHENRLLRTVKILRNKKDIRLGSLVLWRRVTAQPALLIN 388
           + C +  +L    +L+NKK  RL +LVL R   ++    IN
Sbjct: 19  LTCGDENMLAMFNVLKNKKSARLENLVLARNSFSRTVYNIN 59


>03_01_0221 +
           1752500-1752868,1753301-1753436,1753850-1753989,
           1754083-1754206,1754960-1755363
          Length = 390

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 460 QEGYQAWIIGIVEKGNRTARIIDKPRV 380
           +E Y+ W I     G  T R++D PR+
Sbjct: 30  REEYRRWPIAAESGGGETGRVLDMPRL 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,791
Number of Sequences: 37544
Number of extensions: 181527
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)