Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0309
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote...    27   7.5  
At2g03460.1 68415.m00304 kelch repeat-containing protein contain...    27   9.9  

>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 890

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 170 HLNNEGKNIDFR*WTSFATKKKRSYLLLYINKIIYFAVKIKF*NLSSFTKV*LKYFSISH 349
           HL+  G N + R  TSF    +  +L L +N+ +  A+ ++F  L       L+ F+IS+
Sbjct: 90  HLDLSGNNFNGRIPTSFGNLSELEFLDLSLNRFV-GAIPVEFGKLRG-----LRAFNISN 143

Query: 350 LLLI 361
            LL+
Sbjct: 144 NLLV 147


>At2g03460.1 68415.m00304 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 333

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 48  NYTQFTICRNSPQAAKNG*VPGPNGIILI 134
           N T FT+CR   Q   NG +   +G++ +
Sbjct: 48  NTTWFTLCRKPDQTLTNGTIKKSSGLVAV 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,729
Number of Sequences: 28952
Number of extensions: 164359
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)