Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0308
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.42 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.42 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.42 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   0.96 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    24   0.96 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    24   0.96 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.9  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 275 AQKGLGVARLEPPSVQILVVVANTPARPW 189
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 49  APKGFGGVQISPPNENLVVTSSN---RPW 74


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 275 AQKGLGVARLEPPSVQILVVVANTPARPW 189
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 50  APKGFGGVQISPPNENLVVTSSN---RPW 75


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 275 AQKGLGVARLEPPSVQILVVVANTPARPW 189
           A KG G  ++ PP+  ++V  +N   RPW
Sbjct: 50  APKGFGGVQISPPNENLVVTSSN---RPW 75


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 168 FRVNSSCSRVSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLT 25
           F   SS S +  P+  S   C+ ++ +      C N   ++  + QLT
Sbjct: 219 FPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 266


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 168 FRVNSSCSRVSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLT 25
           F   SS S +  P+  S   C+ ++ +      C N   ++  + QLT
Sbjct: 8   FPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 55


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 168 FRVNSSCSRVSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLT 25
           F   SS S +  P+  S   C+ ++ +      C N   ++  + QLT
Sbjct: 8   FPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLT 55


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 365 QNASAPSIFRAG--CFGR*VVAHSLADSDFHGHRPAVMSDQRLS 490
           + A AP++  AG     R       A    H HRPA+   +R++
Sbjct: 274 ERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRRVA 317


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 462 GRWPWKSESAKECATTHLPKQPAL 391
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 462 GRWPWKSESAKECATTHLPKQPAL 391
           GR  WK    +  AT  L K P+L
Sbjct: 79  GRKAWKHLDFRNSATAELLKNPSL 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,903
Number of Sequences: 336
Number of extensions: 3917
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)