Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0308
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 30 0.34
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 29 0.59
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 2.4
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 26 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.2
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.3
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.3
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 9.7
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 116 PLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDP 268
PL S Q ++NP R +SR+ PP+SAP++ S DP
Sbjct: 179 PLASSNNKNHNQ---SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDP 226
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 341 VPVTVVYRQNASAPSIFRAGCFGR*VVAHSLADSDFHGHRPAVMSDQRLSWCPMSVFRRL 520
+P V Y+ + +P + R R L D++ H P+ S + + P S+FRR
Sbjct: 550 MPEVVAYKGDEESPRVSRNTSLAR---RKPLPDTESHSPSPSATSSIKKN--PSSIFRRF 604
Query: 521 NTTFGSSHSASSAYQ 565
++ + S++S Q
Sbjct: 605 SSRRKQNKSSTSTLQ 619
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 179 RQSSRASLEYLLLPPRSAPTEAPSGPRP----DPSALSVAHVLLVT 304
RQSS +YL P S TE G P P A S+ + ++T
Sbjct: 17 RQSSEGHDDYLNRNPNSEATEGEEGTHPTTGTQPVAFSIGTMFIIT 62
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 155 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSAL 277
LFTRN +S+ L +P + ++ SG DP+ L
Sbjct: 4 LFTRNKEEEPTSKIDSSELQVPTEATASDILSGSEFDPAKL 44
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 73 TFRTHIAVRGDTSRTTPV*G---PADSRATTVHAKPFSTSVLQGLAGVFATTTKICTDGG 243
T T I G +S +TP+ P + +T++ P STS + TT+ CT
Sbjct: 230 TTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTST 289
Query: 244 S 246
S
Sbjct: 290 S 290
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 103 DTSRTTPV*GPADSRATTVHAKPFSTSVLQGLAGVFATTTKICTDGGSKR-ATP 261
DTS +TP+ + S ++ S+S L + T+T I GGS +TP
Sbjct: 80 DTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTP 133
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 498 P*AFLGALTLRLVHPTAPVLLTKIG 572
P + +G LR V+P +P+LLT G
Sbjct: 319 PYSLIGHKELRFVYPISPILLTLAG 343
>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 506 VFRRLNTTFGSSHSASSAYQNWPTWHRHQISGF 604
+FRRL++TF +S+ AS ++ + +I G+
Sbjct: 10 IFRRLSSTFKASNKASIEWKKQNIAVKRKIGGY 42
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 53 QDTFEHRHFERTLRSVETHPGPLLSEG 133
QD E + + +++S TH PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 640 FKWVRTPAYSNDEAGDL 590
F ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,421
Number of Sequences: 5004
Number of extensions: 61691
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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