Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0308
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1377 + 36764461-36765339 31 0.61
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411... 31 0.81
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 30 1.4
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 29 2.5
05_01_0304 - 2392526-2392828 29 3.3
01_06_0751 + 31690411-31690443,31692900-31694240 29 3.3
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 29 4.3
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 4.3
04_04_0036 - 22307328-22308026 29 4.3
01_05_0542 + 23086931-23087014,23087116-23087206,23087624-230876... 29 4.3
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 5.7
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 5.7
07_01_0469 - 3552409-3553368 28 5.7
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608 28 5.7
02_05_0011 + 24953472-24954506 28 5.7
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 28 5.7
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 7.6
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 28 7.6
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 28 7.6
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 7.6
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 28 7.6
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 28 7.6
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 28 7.6
01_06_0956 - 33343503-33344086,33344225-33344384 28 7.6
>01_06_1377 + 36764461-36765339
Length = 292
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 110 PGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSG 253
P PL+ R LLF+ NP+P S AS L+ P P+ P G
Sbjct: 97 PKPLVGSARSPLRDLLFSTNPNPSPDSPASA--LITLPLLRPSGRPQG 142
>05_04_0193 +
18939869-18939988,18940714-18941012,18941078-18941186,
18941874-18941999,18942178-18942218,18942614-18942744,
18943218-18943291,18944215-18944450,18944543-18944863,
18945023-18945086
Length = 506
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 116 PLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDP 268
P+ S+ L +FT +P R +++ +LE+ APT+ PRP P
Sbjct: 348 PMASDDALDLLSRMFTYDPKARITAQQALEHRYFLSVPAPTKPSQLPRPPP 398
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 167 NPSPRQSSRASLEYLLLPPRSAPTEA---PSGPRPDPSALSVAH 289
NP+P S+ + L PP +AP A P GP P S A+
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAY 52
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 167 NPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSA 274
NPSP S A + P + P+ PRPDP A
Sbjct: 59 NPSPSSSPLAQTLASIRRSIRRPEDGPAAPRPDPPA 94
>05_01_0304 - 2392526-2392828
Length = 100
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 136 ADSRATTVHAKPFSTSVLQGLAG 204
A+ RATTV A+P +T+V G AG
Sbjct: 37 ANRRATTVKARPATTAVAAGFAG 59
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 264 SGRGPLGASVGADLGGSSKYSS--EALED*RGEGFRVNSSCSRVSRPS 127
+ RGP G G D GGSS S+ EAL G G V S+ R R S
Sbjct: 98 ASRGPGGGGGGGDGGGSSGESTPVEALATAFGAGRIVRSAAGRKDRHS 145
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 167 NPSPRQSSRASLEYLLLPPRSAP---TEAPSGPRPDPS 271
NP+PR+ R S PP P T APS P P PS
Sbjct: 34 NPNPRRHHRPSPSIPPPPPPQRPPAATVAPSVPDPSPS 71
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 174 EGFRVNSSCSRVSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYD---AQLTAFFIDPR 4
+G +++ C+ S P D+ C RNV S +CS V C + A+ F++D +
Sbjct: 964 KGRCIHAFCAEESLPKDKDT--CAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTK 1021
>04_04_0036 - 22307328-22308026
Length = 232
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 156 SSCSRVSRPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 37
SS + RP R G + +R V+ CRC+ C HYD
Sbjct: 106 SSAASRPRPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>01_05_0542 +
23086931-23087014,23087116-23087206,23087624-23087650,
23087742-23087895,23087958-23088023,23088249-23088292,
23088592-23088683,23088779-23088926,23089356-23089420,
23089495-23089592,23090368-23090392
Length = 297
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 290 RARRRAQKGLGVARLEPPSVQILVVVANTPARPWRTDVEKG 168
R+R+RA++ A PP + VV + PWR D G
Sbjct: 5 RSRKRARQDWDGAGAPPPPAERAVVARGGASPPWRDDDRDG 45
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 559 LPKLAHLAPSSDLRLHRSSKPEFSPI 636
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +2
Query: 167 NPSPRQSSRASLEYLLLPPRSAPTE------APSGPRPDPSALSVAHV 292
NP+PR SR+S L PR+ AP GP P P++ +V+ V
Sbjct: 74 NPAPR--SRSSRRSPLASPRTGTASPLSAAVAPGGPAPSPASAAVSSV 119
>07_01_0469 - 3552409-3553368
Length = 319
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 173 SPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSV 283
+PR+S+ A + L P P+ AP+ P P+A +V
Sbjct: 190 TPRKSTTAPVRIQLAPRNPPPSAAPAAPPVPPAAPAV 226
>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
Length = 325
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 209 LLLPPRSAPTEAPSGPRPDPSA--LSVAH 289
LLLPP +AP AP GP S+ L VAH
Sbjct: 64 LLLPPAAAPVAAPPGPVSACSSCGLFVAH 92
>02_05_0011 + 24953472-24954506
Length = 344
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 181 TWRRVSREQ*LLASQPALRQEWSWMCLHGP 92
TWRR S EQ L + P + SW+ H P
Sbjct: 277 TWRRFSAEQVLGKNNPTKSSKSSWISPHFP 306
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 164 RNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSVA 286
R+ P +S R+ PR+A + +P P P P VA
Sbjct: 35 RSSRPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVA 75
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 242 PPSVQILVVVANTPARPW 189
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +2
Query: 74 HFERTLRSVETHPGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSG 253
H E ++ V+ + + T + R++ R SL+ L P S PT
Sbjct: 458 HLEDMIKDVDQNNDGQIDYSEFTAMMRKGNAGGAGRRTMRNSLQLNLAPGSSPPTSLL-- 515
Query: 254 PRPDPSALSVAHVLLVTA 307
P P PS L H+ L A
Sbjct: 516 PSPSPSDLPSLHLPLALA 533
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 291 TCATESAEGSGRGPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRVSRPSDRS 118
+ A +AE + R A ADL +SS+ +ED R F +S S+ S+ S
Sbjct: 230 SAARAAAESANRAASAAKAAADLVNKKTHSSDEVED-RRTSFHESSHSSKRQSMSNSS 286
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 394 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 477
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 110 PGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLL-LPPRSA-PTEAPSG-PRPDPSALS 280
P P+ + +R L R+P PR++ R + PP+ A P +PSG DP+
Sbjct: 14 PFPVTTTASSSRNVRLLLRSPPPRRALRVAASAAADAPPKPAPPPTSPSGIVLVDPTEAQ 73
Query: 281 VAHVL 295
H L
Sbjct: 74 KVHRL 78
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 203 EYLLLPPRSAPTEAPSGPRPDPSA 274
EY + PPRSA + A + P P PS+
Sbjct: 610 EYSITPPRSAASRAITLPPPPPSS 633
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 176 PRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSVAHVLLVTA 307
P A L L P PT A PR DP+ + VTA
Sbjct: 260 PTIGRSAELHDFLTEPSGIPTSAGESPRSDPALSAAMSAAAVTA 303
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 170 PSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSVAH 289
PSPR R + + LPP AP +P+ P P+A H
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRRH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,939,574
Number of Sequences: 37544
Number of extensions: 524578
Number of successful extensions: 2220
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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