Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0308
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 1.7
AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical ... 29 2.9
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 28 5.1
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule abn... 28 6.8
AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule abn... 28 6.8
AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein. 28 6.8
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 27 8.9
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 8.9
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +2
Query: 56 DTFEHRHFERTLRSVETHPGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAP 235
D+F+ F+ R V+ + L+ + R P++S + L + LPP++
Sbjct: 243 DSFDDESFDEKSR-VKDNEARQKRRRELSDDDRKDVRETQPKKSVKEELPQIPLPPKTEA 301
Query: 236 TEAPSGPRPDPSA 274
+PS P P A
Sbjct: 302 AASPSPAPPTPKA 314
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +2
Query: 56 DTFEHRHFERTLRSVETHPGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAP 235
D+F+ F+ R V+ + L+ + R P++S + L + LPP++
Sbjct: 243 DSFDDESFDEKSR-VKDNEARQKRRRELSDDDRKDVRETQPKKSVKEELPQIPLPPKTEA 301
Query: 236 TEAPSGPRPDPSA 274
+PS P P A
Sbjct: 302 AASPSPAPPTPKA 314
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 236 TEAPSGPRP-DPSALSVA--HVLLVTA**YQIKNLASHVPVTVVYRQNASAPSIF 391
TE PS P P PS++SV V L + + AS+VPVT+ A +P+ +
Sbjct: 390 TETPSAPSPASPSSVSVTIPRVALPASVSVPSPSPASNVPVTITLSAPAKSPATY 444
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 170 PSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDP 268
PSP Q S + P S+P P GP P P
Sbjct: 590 PSPSQPSSSGPIQTAPPSPSSPNAIPEGPPPGP 622
>AL032640-2|CAA21643.2| 502|Caenorhabditis elegans Hypothetical
protein Y43F8A.2 protein.
Length = 502
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 161 TRNPSPRQSSRASLEYLLLP-PRSAPTEAPSGPRPDPSA 274
T PS + S + P P APT AP+ P P P+A
Sbjct: 22 TDTPSTADPTAGSTDTSATPMPTDAPTAAPANPPPPPAA 60
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 122 LSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALS 280
+S R++R L R P PR SS+ LP + T S RP+P + S
Sbjct: 12 ISRKRMSRTWLASCRRPEPRSSSQPKEN---LPKENVSTWPASCRRPEPRSSS 61
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 104 THPGPLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPS 271
T+P P + +T +Q+L T + ++ +LE P S P+ APS P P+
Sbjct: 106 TYPRPTVG-APITTQQVLITETTTQPPTTTTTLE--TPAPESTPSMAPSHTDPTPA 158
>AF068708-5|AAK68200.1| 628|Caenorhabditis elegans P granule
abnormality protein 3,isoform b protein.
Length = 628
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -2
Query: 264 SGRGPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRVSRPSDRSGPG 109
SGRG G G D GG Y + RG G + SR R DR G G
Sbjct: 560 SGRGSYGGGRGGDRGGRGAYGGD-----RGRG--GSGDGSRGYRGGDRGGRG 604
>AF068708-4|AAC17755.1| 693|Caenorhabditis elegans P granule
abnormality protein 3,isoform a protein.
Length = 693
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -2
Query: 264 SGRGPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRVSRPSDRSGPG 109
SGRG G G D GG Y + RG G + SR R DR G G
Sbjct: 625 SGRGSYGGGRGGDRGGRGAYGGD-----RGRG--GSGDGSRGYRGGDRGGRG 669
>AB120729-1|BAC87886.1| 693|Caenorhabditis elegans PGL-3 protein.
Length = 693
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = -2
Query: 264 SGRGPLGASVGADLGGSSKYSSEALED*RGEGFRVNSSCSRVSRPSDRSGPG 109
SGRG G G D GG Y + RG G + SR R DR G G
Sbjct: 625 SGRGSYGGGRGGDRGGRGAYGGD-----RGRG--GSGDGSRGYRGGDRGGRG 669
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 170 PSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSVA 286
P P+ +S+ P +AP AP+ P PD +A + A
Sbjct: 30 PPPKSASKMGPPPPAPAPPTAPEAAPAAPTPDAAAAAPA 68
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 462 GRWPWKSESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 319
G W K + + A THLP+ K++ + F C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,741
Number of Sequences: 27780
Number of extensions: 377684
Number of successful extensions: 1195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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