Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0308
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.48 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.9  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   7.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 610  NDEAGDLMTVPSGPILVSRTGA 545
            ND+  D +T P  P+ +SR G+
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGS 1408


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 424 CNDSPAEATSPENGW 380
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 191 RASLEYLLLPPRSAPTEAPSGPRPDPSALSVAHVLLV 301
           R   + +L PP S P      P P   A+ V   L++
Sbjct: 428 RVERDPILTPPSSNPVSPVPSPDPLDLAIPVRETLIL 464


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 365 AYTLPLPARVMLNF 324
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 99  TDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 7
           TDR +R+K     V C     A + + + DP
Sbjct: 74  TDRVIRAKLGKVGVHCMKTTQAVVVSLYEDP 104


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 GHAQTLLRSPSRTSYSLRLNDTKLKI*HH 338
           G     L SP R   + R+N TKLK  HH
Sbjct: 129 GPPSVSLSSPPREPGTPRINFTKLKR-HH 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,208
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)