Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0308
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.39
At1g18040.1 68414.m02231 cell division protein kinase, putative ... 31 0.68
At1g23140.1 68414.m02892 C2 domain-containing protein similar to... 31 0.90
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 29 2.1
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 29 2.7
At3g29033.1 68416.m03629 glycine-rich protein 29 3.6
At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacya... 28 4.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 4.8
At5g66850.1 68418.m08428 protein kinase family protein contains ... 28 6.3
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat... 28 6.3
At2g25100.1 68415.m03003 ribonuclease HII family protein contain... 28 6.3
At1g73690.1 68414.m08533 cell division protein kinase, putative ... 28 6.3
At3g49290.1 68416.m05387 expressed protein 27 8.4
At3g14830.1 68416.m01873 expressed protein 27 8.4
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 27 8.4
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 351 VTGTCDAKFLIW-YH*AVTSRTCATESAEGSG 259
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At1g18040.1 68414.m02231 cell division protein kinase, putative
similar to cell division protein kinase 7 [Homo sapiens]
SWISS-PROT:P50613
Length = 391
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 116 PLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDP 268
P +S+ L +FT +P R S + +LE+ APT+ P+P P
Sbjct: 259 PAVSDDALDLLSKMFTYDPKARISIKQALEHRYFTSAPAPTDPAKLPKPVP 309
>At1g23140.1 68414.m02892 C2 domain-containing protein similar to
zinc finger and C2 domain protein GI:9957238 from
[Arabidopsis thaliana]
Length = 165
Score = 30.7 bits (66), Expect = 0.90
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 165 RVNSSCSRVSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 7
RV + VSR S+ S P V T + + K R SC+ +D +LT DP
Sbjct: 11 RVKRGINLVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDP 63
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 155 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSALSVA 286
+F P P S ++ +++ PPR +P+ APS P ++ SVA
Sbjct: 70 VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYPPSTSPSVA 111
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 504 AFLGALTLRLVHPTAPVLLTKIGPLGTVIRSPASSFE*AGVLTHLKFEN 650
+ LG+ T R V+ + +LL + GTVIRS S+ GV H N
Sbjct: 879 SLLGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSAPRIVGVDLHANERN 927
>At3g29033.1 68416.m03629 glycine-rich protein
Length = 167
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 226 ICTDGGSKRATPRPFCALRRARPTRYGLMIPN*KFSITRAGNGS 357
I D S+ ++P P P RYG + PN +F +AG S
Sbjct: 15 IAGDDDSQSSSPSPGHGQNSPSPRRYGQVTPNPRFHGYQAGGSS 58
>At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacyanin
3 GI:3395770 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain
Length = 187
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 218 PPRSAPTEAPSGPRPDPSALS 280
P SAP+ +PS P P PSA S
Sbjct: 130 PSPSAPSPSPSAPSPSPSAPS 150
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 161 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRPDPSA 274
T P P QS AS + PP S P AP+ P P P++
Sbjct: 95 TPPPQPPQSPPASAPTVSPPPVSPPP-APTSPPPTPAS 131
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 89 LRSVETHPGPLLSE--GRLTREQLLFTRNPSPRQSSRASLE--YLLLPPRSAPTEAPSGP 256
L S T GP L+ G R+ T N S + S + ++ +P SAPT P
Sbjct: 135 LISDRTSSGPPLTSVNGGFARDSRKATENSSYQDFSPRNRNGYWVNIPTMSAPTSPYMSP 194
Query: 257 RPDPSALSVAHVL 295
P P S H L
Sbjct: 195 VPSPQRKSTGHDL 207
>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 520
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 471 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 364
+T+ WP SESAK+ L + P ++ + C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386
>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
Pfam profile: PF01351 ribonuclease HII
Length = 296
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 467 VMSDQRLS-WCPMSVFRRLNTTFGSSHSASSAYQNWPTWHRHQISGF--IVRVS 619
V D+ L W +N FGS + + W H+H + GF +VR S
Sbjct: 170 VTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFS 223
>At1g73690.1 68414.m08533 cell division protein kinase, putative
similar to cell division protein kinase 7 [Homo sapiens]
SWISS-PROT:P50613
Length = 398
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 116 PLLSEGRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGPRP 262
P +SE L +FT +P R S + +L++ +PT+ PRP
Sbjct: 258 PTVSEDALDLLSKMFTYDPKSRISIQQALKHRYFTSAPSPTDPLKLPRP 306
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 80 ERTLRSVETHPGPLLSEGRL-TREQLLFTRNPSPRQS-SRASLEYLLLPPRSA 232
E+ RSV H PLL G + TR+ +R +P +S S + Y P RSA
Sbjct: 212 EQDKRSVSPHRFPLLRSGSVATRKSASISRPTTPSKSRSITPIRYPSEPRRSA 264
>At3g14830.1 68416.m01873 expressed protein
Length = 476
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 99 WRHIQDHSCLRAG*LASNYCSRETLLHVSPPGPRWSICYYHQDLHRRRL 245
W +Q H A LA + L+H++PP W ++H LH+ +L
Sbjct: 10 WEEVQRHGQDLADRLAQGFTG---LIHINPPSFPWPPNHHH--LHKAKL 53
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = -2
Query: 522 LRRLKTLMGHHERRWSLMTAGRWPWKSESAKECATTHLPKQPALKMDGAEAF 367
L+RL+TL H R W G W + P L AEAF
Sbjct: 323 LQRLQTLEKHLRRCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAF 374
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,217
Number of Sequences: 28952
Number of extensions: 363361
Number of successful extensions: 1223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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