Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0305
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.68 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.68 
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   2.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.7  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   6.3  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 298 SGCGRCRVWSMFVRYVRFSE 357
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 482 ARKIRGRPENAGPDPVRNVRRFSRV 408
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 480 SRKVVSVSFRRDRHDSVRPPFNGQLR 557
           +R V  VS RRDRHDS R   + ++R
Sbjct: 37  NRYVDDVSSRRDRHDSFRSHESNKIR 62


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 169 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 41
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 269 LRANPIPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 138
           L +     L+     +P+   S+D R+F LE+  GY  EP   L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 335 TNIDQTRHRPHPLPVQTRHAPV 270
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,503
Number of Sequences: 5004
Number of extensions: 63842
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)