Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0305
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    35   0.076
02_05_0552 - 29911280-29912541,29912633-29912762                       31   1.2  
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745...    29   2.8  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   3.8  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    29   5.0  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   6.6  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   8.7  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   8.7  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   8.7  
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266...    28   8.7  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   8.7  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = -3

Query: 335 TNIDQTRH------RPHPLPVQTRHAPVLRANPIPKL 243
           T IDQ  H      + H +PVQ  H+PVL+ NP P++
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNPSPRI 360


>02_05_0552 - 29911280-29912541,29912633-29912762
          Length = 463

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 718 ESHSYSRRLPALA*ISFTLTFRALGRNHIASTPARAIAMLCFN*TVGFPLSVPVLS*PLN 539
           +S +   RLP  A  + +  F+A G     S PAR+I   CF+      +S+P ++   +
Sbjct: 347 DSGTIITRLPPTAYSALSSAFKA-GMKQYRSAPARSILDTCFDFAGQTQISIPTVALVFS 405

Query: 538 GG 533
           GG
Sbjct: 406 GG 407


>05_05_0276 +
           23771233-23771268,23773552-23773897,23774425-23774541,
           23774712-23774810,23774949-23775016,23775107-23775181,
           23775386-23775931,23776040-23776092,23776163-23776204,
           23776314-23776458,23776541-23776651,23777496-23777921,
           23778116-23778373
          Length = 773

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 509 PKRNRHDLTARKIRGR-PENAGPDPVRNVR 423
           P R +H  TA  ++   PEN GP PV + R
Sbjct: 236 PPRKQHKQTANSVQNTGPENVGPKPVNSPR 265


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 391  QFLRPHYIKILTR*NEHNARTSTRP-GTGRIRFPSKPDTPRSSEPILFRSYGSNLPTSLT 215
            +++  H+IK L   NE +  TS RP GT R    +  D  R +E +L   YGSN    L 
Sbjct: 911  EYIIRHHIKELEALNEASFGTSRRPSGTER----ALNDPLRDNEGMLVDEYGSNTGFHLP 966

Query: 214  YII 206
             +I
Sbjct: 967  NLI 969


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 232 NWIRNFGI---GLALRTGACRVWTGSGCGRCRVWSM 330
           +WIR+ G+    + ++ G  R  TG G  + R+WSM
Sbjct: 7   SWIRHEGLQIFSIDIQPGGIRFATGGGDQKIRIWSM 42


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 214 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 89
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 337 ARTSTRPGTGRIRFPSKPDTPRSSE 263
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 527 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 655
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 527 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 655
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>01_06_0645 +
           30826267-30826307,30826403-30826454,30826580-30826659,
           30826804-30826882,30826962-30827045,30827131-30827276,
           30827362-30827628,30827825-30827907,30828162-30828271,
           30828544-30829159,30829471-30829620,30829700-30829800
          Length = 602

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 337 ARTSTRPGTGRIRFPSKPDTPRSSEPILFRSYGS 236
           A   T PG     FPSK +T   SE  L  SY S
Sbjct: 546 ATMGTAPGLVSSSFPSKTETSSGSEYFLEHSYSS 579


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 167 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 36
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,431,102
Number of Sequences: 37544
Number of extensions: 485309
Number of successful extensions: 1635
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)