Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0305
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    29   3.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.4  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   4.5  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   4.5  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   4.5  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   4.5  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z68752-1|CAA92981.1|  928|Caenorhabditis elegans Hypothetical protein
            T12G3.2a protein.
          Length = 928

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/85 (29%), Positives = 41/85 (48%)
 Frame = -1

Query: 331  TSTRPGTGRIRFPSKPDTPRSSEPILFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 152
            T   P   ++R P+    PRSS+  L RS   +LP S T + +S    SP +P + + + 
Sbjct: 845  TMISPPPAKVRPPAVDTYPRSSQFELVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSP 901

Query: 151  RRDISTYIPHLNFQGPQRVSGHRRK 77
             +   T IPH+   G   +  H ++
Sbjct: 902  NQ---TTIPHMYNNGIPMIYEHHQQ 923


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 560 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 658
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 575 ESDCLIKTKHCDGPRGC*RNVISAQC-SECQRERNSSK 685
           +  C+++++ CDG   C   +    C   C  ER SSK
Sbjct: 302 DGTCIMRSQVCDGKHDCLDGIDEENCPGSCSNERFSSK 339


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 560 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 658
           W+  G   C+ + K CDG + C       QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 361 LTR*NEHNARTSTRPGTGRIRFPSKPDT 278
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 361 LTR*NEHNARTSTRPGTGRIRFPSKPDT 278
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 361 LTR*NEHNARTSTRPGTGRIRFPSKPDT 278
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 361 LTR*NEHNARTSTRPGTGRIRFPSKPDT 278
           LT  NE+   TS++PG  R+  P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 344 T*RTNIDQTRHRPHPLPVQT 285
           T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 325 TRPGTGRIRFPSKPDTPRSSE-PILFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGT 155
           +RP +GR R P+ P+ P+  E P +F     N+P + T I L    ++ W P A   T
Sbjct: 157 SRP-SGRRRLPATPNLPKHGELPQIF-----NIPHANTLISLQLCVNNNWSPRAPGST 208


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 295 PSKPDTPRSSEPILFRSYGSNLPTSLTYIILSTRGSSP-WRPAADMGTNRRDISTYIPHL 119
           P+ PD P S + I  R YG+N P +    IL+   ++P   P AD        + YI +L
Sbjct: 189 PTDPDDPLSRQNIRDRYYGTNDPVAEK--ILNRAAAAPTLSPPADTTIT----TLYIGNL 242

Query: 118 NFQGPQRVS 92
              G Q+V+
Sbjct: 243 GPSGAQQVT 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,028
Number of Sequences: 27780
Number of extensions: 375246
Number of successful extensions: 1126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)