Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0305
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59510.1 68418.m07458 expressed protein                             30   1.4  
At2g24980.1 68415.m02987 proline-rich extensin-like family prote...    30   1.4  
At1g07220.1 68414.m00768 expressed protein                             29   3.1  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   4.1  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   4.1  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.5  
At5g06630.1 68418.m00749 proline-rich extensin-like family prote...    28   5.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.5  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    28   7.2  
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa...    28   7.2  
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa...    28   7.2  
At5g62440.1 68418.m07837 expressed protein                             27   9.6  
At5g35190.1 68418.m04170 proline-rich extensin-like family prote...    27   9.6  
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    27   9.6  
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ...    27   9.6  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   9.6  

>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = -1

Query: 331 TSTRPGTGRIRFPSKPDTPRSSEPILFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 152
           +S++P   R  F +KP +  SSEPI  RS+ +  PTS     LS  GS+   P     T+
Sbjct: 38  SSSKPVFTR-SFSTKPTSYSSSEPIFRRSFSAK-PTSSKSPFLSRSGSTKC-PVDTSSTS 94

Query: 151 RRDIS 137
           +  IS
Sbjct: 95  KCSIS 99


>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 559

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
 Frame = -3

Query: 317 RHRPHPLPVQTRHAPVLRANPIPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 138
           ++ PHP P      P     P PK+  +    PY++ S     ++      Y   P  ++
Sbjct: 44  KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYV 103

Query: 137 HVHPSPEF---SRSAESIRTPPQMRCSSRSEPY 48
           +  P P +   S   +    PP    SS   PY
Sbjct: 104 YSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY 136


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 245 LRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRC 69
           L + F  F   L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++C
Sbjct: 26  LALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQC 84

Query: 68  SSRSEPY 48
           S  S PY
Sbjct: 85  SYFSCPY 91


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 290 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 448
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 76  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 177
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 451 RVRIQSET*DDFRECHIKYIQFLRPH 374
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 440

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = -3

Query: 317 RHRPHPLPVQTRHAPVLRANPIPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 138
           ++ PHP P      P     P PK+  +    PY++ S     ++      Y   P  ++
Sbjct: 50  KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYV 109

Query: 137 HVHPSPEFSRSAESI--RTPPQMRCSSRSEP--YLPS 39
           +  P P +   +  +  ++PP     S   P  Y PS
Sbjct: 110 YSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPLYYSPS 146


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 101 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 3
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 331 TSTRPGTGRIRFPSKPDTPRSSEPILFRSYGSNLPTS 221
           T+   GT + RFP K   P S+E + F    ++LP S
Sbjct: 216 TTVIDGTRQSRFPEKSAFPGSAEVVSFSILNTDLPFS 252


>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 271 SSEPILFRSYGSNLPTSLTYIILSTRGSSP 182
           +S  I+  ++ S  PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185


>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 379

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 271 SSEPILFRSYGSNLPTSLTYIILSTRGSSP 182
           +S  I+  ++ S  PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185


>At5g62440.1 68418.m07837 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
 Frame = -2

Query: 684 LLEFLSR*HSEHWAEI-------TLRQHPRGPSQCFVLIRQSDS 574
           LL+ + + HSE   +I        +R HP   S+CF L+R+ D+
Sbjct: 105 LLDLIKKGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDT 148


>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 328

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
 Frame = -3

Query: 317 RHRPHPLPVQTRHAPVLRANPIPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 138
           ++ PHP P      P    +P PK   +    PY++ S     ++      Y   P  ++
Sbjct: 69  KYTPHPKPYLFNSPPPPYYSPSPKEDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYV 128

Query: 137 HVHPSPEF---SRSAESIRTPPQMRCSSRSEPY 48
           +  P P +   S   E    PP    +S   PY
Sbjct: 129 YNSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPY 161


>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
 Frame = -1

Query: 538 GGRTESCRSRRNETDTTLRLGRSAEG-RRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI 362
           GG+ +SC     +++  L+  +  E    T+    +E  DD        +  + P++   
Sbjct: 603 GGKKKSCSQMDAQSNRPLKRAKDMEHVASTKYVSPTEKLDD-------EVDIVEPNFSLG 655

Query: 361 LTR*NEHNARTSTRPGTGRIR-FPSKPDTPRSSEPILFRSYGSNLPTSLTYI 209
           LT+  E N   S  P  G+ + FPSK    RSS  I  R   SN   ++T I
Sbjct: 656 LTQ--EINDNRSRLPPRGKKKTFPSKVSVLRSSNRIRDRPIQSNSIENMTSI 705


>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
           protein low similarity to poly(A) binding protein II
           from [Xenopus laevis] GI:11527140, [Mus musculus]
           GI:2351846, [Bos taurus] GI:1051125; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) domain
          Length = 537

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 527 CTTAVQRSAQNWHGQGESDCLIKTKHCDG-PRGC*RNVISAQCSECQRERNSSKR 688
           CT A +R  +NW+  G S  ++++       + C RN    + S  +R R   KR
Sbjct: 167 CTRARRRKKENWNSSGYSRKVLRSVIVSATQQPCDRNPAKYEKSMNERSRTLKKR 221


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 143 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 54
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,400,023
Number of Sequences: 28952
Number of extensions: 358189
Number of successful extensions: 1070
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)