Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0304
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   6e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   9e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   6e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.088
SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   29   5.8  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -3

Query: 133 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -3

Query: 118 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -3

Query: 118 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -3

Query: 118 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -3

Query: 118 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -3

Query: 115 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -3

Query: 115 RTSAKAFAKGVFINQERKLEVRRRLDT 35
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = -3

Query: 118 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           R+T+  ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 140 VKFLDRRKTNISESICQRCFHQSRTKV 60
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +2

Query: 680 DVVAVSQAPSPESNPDSPLPVTTM 751
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = -3

Query: 118 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           R+T+  ++  + VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 140 VKFLDRRKTNISESICQRCFHQSRTKV 60
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -3

Query: 118 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 137 KFLDRRKTNISESICQRCFHQSRTKV 60
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -3

Query: 118 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 140 VKFLDRRKTNISESICQRCFHQSRTKV 60
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -3

Query: 118 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -2

Query: 140 VKFLDRRKTNISESICQRCFHQSRTKV 60
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 689 AVSQAPSPESNPDSPLPVTTM 751
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 690 PFLRLPLRNRTLIPRYP 740
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -1

Query: 606 TLTRPRNRNEYTLNILTRNNWRASLVPAAAVIP 508
           T  +   R    ++++ R +WRASLVPAAAVIP
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIP 76


>SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 547 LEGKSGASSRGNSAPIAYTKIVAVKKL 467
           +EGKSGASSRG S+  +  K+ + KKL
Sbjct: 1   MEGKSGASSRGYSSSNSVYKVCSFKKL 27


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 555 RNNWRASLVPAAAVIP 508
           R +WRASLVPAAAVIP
Sbjct: 14  RIHWRASLVPAAAVIP 29


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 540 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 665
           PSN  CS L YL+C          +R+++F H L     +G  RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 416  SITADACTDSAAHKCNYELFNRNNFSIRYWSGITAAAGT 532
            ++ +  CT   +H C Y     +NF+    SG T ++GT
Sbjct: 982  NVLSTTCTFEESHICGYMQDTTDNFNWNRGSGATVSSGT 1020


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 473 FNRNNFSIRYWS-GITAAAGTRLALQLFLVKIFKVYSFRLRGL 598
           +    F+I  W    T   G+R  L+ F++  +KVY  RL GL
Sbjct: 714 YTLGRFTIHDWKVHDTHLEGSRYTLERFMIHPWKVYDTRLEGL 756


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 201 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 91
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,583,750
Number of Sequences: 59808
Number of extensions: 535772
Number of successful extensions: 1445
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)