Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0304
         (798 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M28864-1|AAA03014.1|  293|Drosophila melanogaster seven-up prote...    29   7.4  
AE014297-1474|AAN13541.1|  746|Drosophila melanogaster CG11502-P...    29   7.4  
AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-P...    29   9.7  

>M28864-1|AAA03014.1|  293|Drosophila melanogaster seven-up protein
           type 2 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 623 SSLPPRAGSG*FARLLPSLDV-VAVSQAPSPESNPDSPLPVTTMVVAELP 769
           +SLP ++ SG  +R L +  +  +++ AP+P S   +P PV T  VA++P
Sbjct: 148 ASLPTQSQSGSSSRNLTASPLSTSLATAPAPAS-ASAPAPVPTSSVAQVP 196


>AE014297-1474|AAN13541.1|  746|Drosophila melanogaster CG11502-PA,
           isoform A protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 623 SSLPPRAGSG*FARLLPSLDV-VAVSQAPSPESNPDSPLPVTTMVVAELP 769
           +SLP ++ SG  +R L +  +  +++ AP+P S   +P PV T  VA++P
Sbjct: 601 ASLPTQSQSGSSSRNLTASPLSTSLATAPAPAS-ASAPAPVPTSSVAQVP 649


>AE014297-3736|AAF56416.3|  993|Drosophila melanogaster CG13654-PA
           protein.
          Length = 993

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 663 RAN-YPLPARGGSDEK*RYGTLTRPRNRNEYTLNI-LTRNNWRASLV 529
           RAN YPL   GG+D    +GT+ RP    E ++   +  N+W  +L+
Sbjct: 352 RANGYPL---GGTDHNHGHGTIIRPNQTTEISIQFGVQPNSWHYALL 395


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,895,524
Number of Sequences: 53049
Number of extensions: 800082
Number of successful extensions: 2069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2069
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)