Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0304
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  

>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 774 FDGSSATTMVVTGNG 730
           FDG+  T++VVT NG
Sbjct: 83  FDGTYQTSVVVTHNG 97


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 148 VAIRMPPVIPINH-----YLGVLKTN 210
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 148 VAIRMPPVIPINH-----YLGVLKTN 210
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +1

Query: 148 VAIRMPPVIPINH-----YLGVLKTN 210
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 493 YTLLERNYRGCWHQTCP 543
           + L+++N  GCW+   P
Sbjct: 330 FNLIDQNAVGCWNSLLP 346



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 136 NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 14
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 774 FDGSSATTMVVTGNG 730
           FDG+  T +VVT NG
Sbjct: 151 FDGTYQTNVVVTHNG 165


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 774 FDGSSATTMVVTGNG 730
           FDG+  T +VVT NG
Sbjct: 151 FDGTYQTNVVVTHNG 165


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 125  RRKTNISESICQRCFHQ 75
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 681  SKEGSRRANYPLPARGGSDEK*RYG 607
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,369
Number of Sequences: 438
Number of extensions: 5469
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)