Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0304
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    30   1.5  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    30   1.5  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    29   2.7  
At1g48110.1 68414.m05369 expressed protein contains Pfam profile...    29   2.7  
At4g10890.1 68417.m01772 expressed protein                             29   4.7  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    28   8.3  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 662 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAEL 766
           RLLPSL VV+   +P+ +  P S LP + + V EL
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLEL 118


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 671 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAELPSKS 778
           PS    A + APSP +NP    P T   V++ P++S
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 525 LAPDLPSNCSSLKYLKCTHSDYE 593
           L+ DL +NCSSL+YL  +H+  E
Sbjct: 164 LSDDLFNNCSSLRYLSLSHNHLE 186


>At1g48110.1 68414.m05369 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 639

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 780 QLFDGSSATTMVVTGNGESGFDSGEGA*ETATTSKEGSRRANYPLPA 640
           ++   SS  ++V TG+   G   G G+ + + T+  G +R +  LPA
Sbjct: 124 EIVSNSSTNSLVETGSANRGRSDGRGSRQRSGTATAGLQRNDPKLPA 170


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 122 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 6
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 217 EPRSYSIIPCTKYQAAFLARFEHSNLFKVKLSAHLDTHR 333
           EP    ++ C K    F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,272
Number of Sequences: 28952
Number of extensions: 365976
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)