Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0301
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    29   0.40 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.2  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   8.7  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -1

Query: 160 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVCFLTRASRLRRSG 38
           DF+SR         + + RRR P  SRR +   C   RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 145 VSHSKRETRRRSPFGSRRSMLSVCFLTRASRLRRSGYNXVRCRGS 11
           +   +   RRR P   RR ++  CF  +A ++R  G N  +   S
Sbjct: 17  MKQEQHNRRRRVPMERRRRVVLACFNCKARKVRCDGANPCKACAS 61


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 309 PNVRNCGSSRTEQYYYRNDKPSVG 380
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,492
Number of Sequences: 5004
Number of extensions: 50643
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)