Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0301
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.96
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 30 1.3
07_03_0846 - 21983581-21986055 29 2.2
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 2.2
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447... 29 3.9
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 28 5.1
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 28 5.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 6.8
06_01_1170 - 10002650-10004122 27 8.9
06_01_0107 - 854756-854883,855126-856968 27 8.9
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 27 8.9
02_05_0814 - 31970558-31971126,31971242-31971413 27 8.9
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.9
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 232 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 98
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -3
Query: 467 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 342
EA A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 90 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 239
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 589 YKEFLARG-ARKVTTGITGLWQPSVHSDLLFD 497
YK F A G RKV GIT + PS+ DL FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>06_01_0616 +
4467439-4467733,4469232-4469294,4469840-4471176,
4472719-4473086,4473526-4473559,4473978-4474421
Length = 846
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 183 SRGSTVSISLPDSA---RLASALEAFRIIPWMVASHH 284
+RG S+S+P A RL +AL A +I+PW V H
Sbjct: 235 ARGVVDSVSVPADATDGRLDAALRAVKIMPWRVYVVH 271
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 416 SRSLLMGEQSNAWRILLRNDRKSRHRRIKKQVAMNAWLPQASYPCGNFSGTSC*K 580
S S L+G+ +N + R+ + R I + + AW C N +G++C K
Sbjct: 14 SISALVGDVTN---LSAEESRRRQQREINNSLKVEAWNEYTFLGCANTAGSACKK 65
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.3 bits (60), Expect = 5.1
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 18 RHLTXLYPDLRSR-DARVKKQTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 188
RH+ L ++RS D +T ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 189 GSTVSISLPDSARLASALEAFRIIPWMVASHHRPL-GRVHEPNV 317
GSTVSI+LP ++ S+ A I + RPL GR P V
Sbjct: 204 GSTVSINLPVVNQVFSSNRAIIIPHTSPLARIRPLAGRYVPPEV 247
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 241 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVCFL 68
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 67 TRASR 53
TRA+R
Sbjct: 64 TRAAR 68
>06_01_1170 - 10002650-10004122
Length = 490
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 183 SRGSTVSISLPDSARLASALEAFRIIPWMVASHHRPL 293
S GS + P +A LA+ALE R+ A H PL
Sbjct: 298 SFGSMAQLQPPHAAALAAALERTRVAFVWAAGSHTPL 334
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 563 QKSYHRDNWLVAAKRS*RLAF*SFDVGSSYHCEAKFAKR 447
+ S H D+WL A S RL D H EA A R
Sbjct: 205 ESSPHGDDWLTLAAASSRLLVRGLDAAPVLHLEAHHAGR 243
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/87 (20%), Positives = 33/87 (37%)
Frame = -1
Query: 334 EEPQFRTFGSCTRPSGRWCEATIHGIILNASKAEASLAESGKDMLTVEPRESGGSKQCDF 155
EEP + C + + CE+ I + + L + K + P+ ++
Sbjct: 461 EEPVIKEIEPCYKNNSAMCESEIQEA---SPMTDIFLEKPTKVYSSKSPQNESDTEDGSS 517
Query: 154 TSRVSHSKRETRRRSPFGSRRSMLSVC 74
+SH + SP GS S+ +C
Sbjct: 518 WETISHEDMQASSGSPDGSEPSVNKIC 544
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 297 GRAAGGAKLPSTGLS*TPLRPKPA*PNP 214
G GG PS+ S TP P P+ P P
Sbjct: 135 GGGGGGGSTPSSPSSPTPTTPNPSTPTP 162
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 213 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 109
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,126,248
Number of Sequences: 37544
Number of extensions: 364979
Number of successful extensions: 950
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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